Gene Bphyt_5566 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_5566 
Symbol 
ID6277701 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp1769304 
End bp1770050 
Gene Length747 bp 
Protein Length248 aa 
Translation table11 
GC content61% 
IMG OID642616645 
Productacetoacetyl-CoA reductase 
Protein accessionYP_001889288 
Protein GI187920257 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01829] acetoacetyl-CoA reductase 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.431609 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGGCTA AGCGCGTTGC CTTTATCACC GGTGGCATGG GCGGACTGGG GGCTGCCGTC 
AGCCGGCGTC TTCACGACGC CGGCATGGTA GTCGCCATGT CGCATTCGGA GCGTAACGAT
CACGTCGCCA CATGGCTCAT GCATGAACGC GACGCCGGCC GGCGCTTTCA TGCATACGAA
GCCGACGTGA CCAGTTTCGA TTCGTGCGCA CATTGCGCGG CACGTGTGCT CGACGAATTC
GGCTCGGTCG ACGTACTTGT CAACAATGCC GGCATCGCAC GCGATTCGAC CTTTGCCAAA
ATGAGCAAGG ACGACTGGGA TGCGGTTCTG CGCACCGATC TCGACTCGAT GTTCAACATG
ACCAAGCCGT TGCTGGGCAG CATGGTTGCC CAACGCTTCG GACGTATCGT CAATATCGCC
TCGGTGAACG GTGCGCGCGG CGCCTTCGGG CAGACCAATT ATGCGGCGGC GAAAGCGGGG
ATTCATGGCT TCACGATGTC GCTCGCACTG GAAGTTGCGA AACATGGCGT TACGGTGAAC
ACCGTCTCGC CCGGTTATCT CGCGACCGCG ATGACCGCGG CCGTGCCGAA AGAGGTGATG
GAGACGAAGA TCCTGCCGCA GATTCCAGTA GGTCGCCTTG GGCAACCCGA CGAAGTTGCC
GCGCTGGTGG CGTTTCTCTG TTCGGACGAC GCGGCTTTCG TCACCGGCGC GAACTTCGCC
ATCAACGGCG GCATGCATAT GGGCTGA
 
Protein sequence
MSAKRVAFIT GGMGGLGAAV SRRLHDAGMV VAMSHSERND HVATWLMHER DAGRRFHAYE 
ADVTSFDSCA HCAARVLDEF GSVDVLVNNA GIARDSTFAK MSKDDWDAVL RTDLDSMFNM
TKPLLGSMVA QRFGRIVNIA SVNGARGAFG QTNYAAAKAG IHGFTMSLAL EVAKHGVTVN
TVSPGYLATA MTAAVPKEVM ETKILPQIPV GRLGQPDEVA ALVAFLCSDD AAFVTGANFA
INGGMHMG