| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5546 |
|---|
| Symbol | |
|---|
| ID | 6280435 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 1752723 |
|---|
| End bp | 1753415 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642616628 |
|---|
| Product | CBS domain containing membrane protein |
|---|
| Protein accession | YP_001889271 |
|---|
| Protein GI | 187920240 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3448] CBS-domain-containing membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.103522 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.484256 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGCAT CCGATGTCAT GACCCGCTCA GTCATATCAG TCCATCCCGA CTCGACGGTA
AGAGAGGTCG CCAAAATATT TGTCGACAAC GGAATAAGCG GCGCACCAGT GCTCGATGCT
GACGGCCATC TGATCGGCAT GATCAGCGAG GGCGATCTGC TTCGCCGCAA CGAAATCGGC
ACCGACGAAC GCTCGCGAAC CTCGTGGCTC GATCATCTCT GGTCTGCAAG CCATGAAGCG
CGGGATTACA TCAAGACCCA TGCGACGAAA GTGCGTGACG TGATGTCTAC CGAGGTCGTG
ACCGTTCAGC CCGGCACGCC GCTCGGCGAA GTAGCCAGCA TTCTTGAGAC ACGGCGCATC
AAACGCGTGC CCGTGACCGA AGCGGGGCGG CTCGTGGGCA TTGTGAGCCG TGCCAACCTC
GTGCAGGCCC TCGCCAGCGT GCCAGAGCAG CCAACGTCGG ACGTGACGCT TCCGGATGCC
GAGATTCGCG CGATGTTGCT GGGCGAGCTT GCTGGTCGTA AATGGAGCTT CGCGGGACGC
AATATTGTCG TCGTCGACGG CGTCGTGCAT CTGTGGGGCG TGTTCCATTC GTTGGAAGCA
GTCGAAGCGG TTCGTGTGGC GGCGCAAACC ATACCCGGCG TCAAGCGCGT GGACGATCAC
ACCGAGCCGT ATCCTGTGAT GCCGGGCATC TAG
|
|---|
| Protein sequence | MRASDVMTRS VISVHPDSTV REVAKIFVDN GISGAPVLDA DGHLIGMISE GDLLRRNEIG
TDERSRTSWL DHLWSASHEA RDYIKTHATK VRDVMSTEVV TVQPGTPLGE VASILETRRI
KRVPVTEAGR LVGIVSRANL VQALASVPEQ PTSDVTLPDA EIRAMLLGEL AGRKWSFAGR
NIVVVDGVVH LWGVFHSLEA VEAVRVAAQT IPGVKRVDDH TEPYPVMPGI
|
|---|
| |