| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5543 |
|---|
| Symbol | |
|---|
| ID | 6277808 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 1750134 |
|---|
| End bp | 1750703 |
|---|
| Gene Length | 570 bp |
|---|
| Protein Length | 189 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642616625 |
|---|
| Product | Lipocalin family protein |
|---|
| Protein accession | YP_001889268 |
|---|
| Protein GI | 187920237 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3040] Bacterial lipocalin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.472799 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 0.93837 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAAT CAACCGCGTT CATCGCCGCG TTGGCGATAT GGCTGACCGG GTGCGCGCAC
GATCCTTCGG TCAGGGTATC CCGCTCGGCA TGCGTGGCTG GTCCGCCCAT CGACCTCGAA
CGGTACATGG GAAAGTGGTA TGTGATCGCG GAAACACCGT TTCTCAGCGA GCACGACTAC
GTCGGCAGTT ACGACGAGTG GACGTTGCGT GCCGACGGGA AAATCGACGA CAAATACCTT
GGCCGGCGCC ACAGCTTCGA TCAACCCGCC ACAGGAAGTC AATTCGTGGC GAAGGTCATG
CCGGGAACAG GCGGCACCAC ATGGCGGGTA GGATTGATCT GGCCGTTTGA AGTGGTGGTC
GTTACTGCGT ATGTAGATGC CGGCTATCGC TACACGATCC GTTGCATGGC CGACGGCAAC
ATGGTCTGGG TGCTCGCACG CAACCCGACG ATCGACGAAG CCGCCTATTC GGATATGCTC
GACCGGCTTG AAGGCATGGG CTTCAACGTC GACCGCGTGC GCCGGGTGCC GCAAAGTGCC
GGGCAAATCG GGCTACCCGG TTTTCAGTGA
|
|---|
| Protein sequence | MQKSTAFIAA LAIWLTGCAH DPSVRVSRSA CVAGPPIDLE RYMGKWYVIA ETPFLSEHDY
VGSYDEWTLR ADGKIDDKYL GRRHSFDQPA TGSQFVAKVM PGTGGTTWRV GLIWPFEVVV
VTAYVDAGYR YTIRCMADGN MVWVLARNPT IDEAAYSDML DRLEGMGFNV DRVRRVPQSA
GQIGLPGFQ
|
|---|
| |