Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_5535 |
Symbol | |
ID | 6278132 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | + |
Start bp | 1743573 |
End bp | 1744748 |
Gene Length | 1176 bp |
Protein Length | 391 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642616617 |
Product | porin Gram-negative type |
Protein accession | YP_001889260 |
Protein GI | 187920229 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 0.438233 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAAAA TACTTATTTT CACCGCCGCC GGCGCGCTTT TCGCTGCCGC GGCGTCCTCG GCATTCGCCC AAAGCTCGGT CACGCTGTAC GGCATCGTCG ATGAAGCCAT CCGCTATCAG ACGAATGCCG GCCCCGGTGG CAAAGACCAG GTCGCCATGA CGTCCGGCCC CGAAACCCAC AGCCGCTGGG GCTTGAGGGG CAGCGAGGAT CTGGGGGATG GCTGGTCCGC AATCTTCCGC CTTGAAAACG GCTTCGAAGC CTTTAATGGG CAACTACATG TCCCTGGCAC ACTGTTCAGC CGGCAAGCTT TCGTGGGCCT GTCGAACAAA ACGTGGGGCT CGCTGACCTT TGGCAGGCAA TATGCGCCGG CCTACGACAC CTTGGGCGAT ATCTTCGACC CGCTGACCGT TGGCAACTAC TGGCAAAACA GCTGGATGTA TAACGGCATC GGCCCTTACC TGGAAATCAA CAACTCGGTC AAGTACAAGG GCAGCTTCTA TGGCCTCGAT GTCGATGCCC TTTACGGCTT TGGCAACCAG GCGGGCGCGG TCGGCCTCGG CGCCACCTAT GCCGTGGAAC TGACGTACAC ATACGGCCCT GCCATGCTCA ACGCCGGCTT CCAGCAGGTT TCCGTTCCGA CATCCGCAAC GGGCTCTTCG GTTGGCACCA GTGTCGGCAG CCCAATCAAC GGCGCCAAGA CCAACTTCCT GCACATCAGC GGCGCGTTTC AGGTCACCCA CGACATCCGC CTCCTGGCCG GCTGGCTGCG GGGGCAGGAC CGTACTGGTT TGACCGACAG CTACATGCAG CAATCTGGCG CGCCGACACT AAAAGGCGGC AGCCCCAACC GAATCGACGA CACCTATTAC GTCGGTGCGA ACTGGCACGC CATGTCTGCA CTGCTCTTTA CGTTCGCCTA CTACTACGGG CAGACCCGCA ATGCTGAACT GCTCGACGGC ACGCTCGGCA GAGGGGTGAA CCAGTCGGCC ACCGTTCTCG CCGAATACTC GTTCACGAAA CGCACCGAAG TCTACGGGAT CACAGACTTC GCGCGCGGCA CAGGCGCCTT CTCCGCCGAC TACCCCGGCG GGGTCAACGG CCAGGGCGTT CCGACCAACA CCATTGGCCG GACCAATCAG GTAGGCGTGG CAATCGGACT TCGCACGATC TTCTAA
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Protein sequence | MNKILIFTAA GALFAAAASS AFAQSSVTLY GIVDEAIRYQ TNAGPGGKDQ VAMTSGPETH SRWGLRGSED LGDGWSAIFR LENGFEAFNG QLHVPGTLFS RQAFVGLSNK TWGSLTFGRQ YAPAYDTLGD IFDPLTVGNY WQNSWMYNGI GPYLEINNSV KYKGSFYGLD VDALYGFGNQ AGAVGLGATY AVELTYTYGP AMLNAGFQQV SVPTSATGSS VGTSVGSPIN GAKTNFLHIS GAFQVTHDIR LLAGWLRGQD RTGLTDSYMQ QSGAPTLKGG SPNRIDDTYY VGANWHAMSA LLFTFAYYYG QTRNAELLDG TLGRGVNQSA TVLAEYSFTK RTEVYGITDF ARGTGAFSAD YPGGVNGQGV PTNTIGRTNQ VGVAIGLRTI F
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