Gene Bphyt_5535 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_5535 
Symbol 
ID6278132 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp1743573 
End bp1744748 
Gene Length1176 bp 
Protein Length391 aa 
Translation table11 
GC content61% 
IMG OID642616617 
Productporin Gram-negative type 
Protein accessionYP_001889260 
Protein GI187920229 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value0.438233 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACAAAA TACTTATTTT CACCGCCGCC GGCGCGCTTT TCGCTGCCGC GGCGTCCTCG 
GCATTCGCCC AAAGCTCGGT CACGCTGTAC GGCATCGTCG ATGAAGCCAT CCGCTATCAG
ACGAATGCCG GCCCCGGTGG CAAAGACCAG GTCGCCATGA CGTCCGGCCC CGAAACCCAC
AGCCGCTGGG GCTTGAGGGG CAGCGAGGAT CTGGGGGATG GCTGGTCCGC AATCTTCCGC
CTTGAAAACG GCTTCGAAGC CTTTAATGGG CAACTACATG TCCCTGGCAC ACTGTTCAGC
CGGCAAGCTT TCGTGGGCCT GTCGAACAAA ACGTGGGGCT CGCTGACCTT TGGCAGGCAA
TATGCGCCGG CCTACGACAC CTTGGGCGAT ATCTTCGACC CGCTGACCGT TGGCAACTAC
TGGCAAAACA GCTGGATGTA TAACGGCATC GGCCCTTACC TGGAAATCAA CAACTCGGTC
AAGTACAAGG GCAGCTTCTA TGGCCTCGAT GTCGATGCCC TTTACGGCTT TGGCAACCAG
GCGGGCGCGG TCGGCCTCGG CGCCACCTAT GCCGTGGAAC TGACGTACAC ATACGGCCCT
GCCATGCTCA ACGCCGGCTT CCAGCAGGTT TCCGTTCCGA CATCCGCAAC GGGCTCTTCG
GTTGGCACCA GTGTCGGCAG CCCAATCAAC GGCGCCAAGA CCAACTTCCT GCACATCAGC
GGCGCGTTTC AGGTCACCCA CGACATCCGC CTCCTGGCCG GCTGGCTGCG GGGGCAGGAC
CGTACTGGTT TGACCGACAG CTACATGCAG CAATCTGGCG CGCCGACACT AAAAGGCGGC
AGCCCCAACC GAATCGACGA CACCTATTAC GTCGGTGCGA ACTGGCACGC CATGTCTGCA
CTGCTCTTTA CGTTCGCCTA CTACTACGGG CAGACCCGCA ATGCTGAACT GCTCGACGGC
ACGCTCGGCA GAGGGGTGAA CCAGTCGGCC ACCGTTCTCG CCGAATACTC GTTCACGAAA
CGCACCGAAG TCTACGGGAT CACAGACTTC GCGCGCGGCA CAGGCGCCTT CTCCGCCGAC
TACCCCGGCG GGGTCAACGG CCAGGGCGTT CCGACCAACA CCATTGGCCG GACCAATCAG
GTAGGCGTGG CAATCGGACT TCGCACGATC TTCTAA
 
Protein sequence
MNKILIFTAA GALFAAAASS AFAQSSVTLY GIVDEAIRYQ TNAGPGGKDQ VAMTSGPETH 
SRWGLRGSED LGDGWSAIFR LENGFEAFNG QLHVPGTLFS RQAFVGLSNK TWGSLTFGRQ
YAPAYDTLGD IFDPLTVGNY WQNSWMYNGI GPYLEINNSV KYKGSFYGLD VDALYGFGNQ
AGAVGLGATY AVELTYTYGP AMLNAGFQQV SVPTSATGSS VGTSVGSPIN GAKTNFLHIS
GAFQVTHDIR LLAGWLRGQD RTGLTDSYMQ QSGAPTLKGG SPNRIDDTYY VGANWHAMSA
LLFTFAYYYG QTRNAELLDG TLGRGVNQSA TVLAEYSFTK RTEVYGITDF ARGTGAFSAD
YPGGVNGQGV PTNTIGRTNQ VGVAIGLRTI F