Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_5530 |
Symbol | |
ID | 6280082 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | + |
Start bp | 1737626 |
End bp | 1739257 |
Gene Length | 1632 bp |
Protein Length | 543 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642616612 |
Product | drug resistance transporter, EmrB/QacA subfamily |
Protein accession | YP_001889255 |
Protein GI | 187920224 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.214437 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.30089 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATACA ACCTCAACGC AGCCAGTCCG CGGCACACCG ATCCGGAGAA CCGCTTGAGC CAGCCCCCTT CAGCGCCCGC CGCGGCGCCG CCCGCACCAC CGCCGCCGCT GAAGGGCGGC CAGCTGGTGC TCGCCACGAT TGCCGTCGCG CTCGCCACCT TCATGAATGT GCTGGACACG TCGATCGCGA ACGTTGCGAT TCCAACCATT TCGGGCAACC TCGGCGTCTC GGTGGATGAA GGCACGTGGG TCATCACCGT GTTCGCCGCG GCCAACGCCG TGTCGATCCC GCTCACCGGC TGGCTCACGC AACGCATCGG CCAGGTGAAG CTGTTCGTCG GCGCGATCCT GATGTTCGTG CTGGCGTCTT GGTTGTGCGG CATTGCGCCG ACGCTGCCGA TCCTGCTGCT CGCACGGGTT TTCCAGGGCG CCGTGGCCGG CCCGCTGATT CCGCTGTCGC AAGCCATTCT GCTCGGCTCG TATCCGAAGG AGAAATCCTC GACCGCGCTT TCCTTATGGG CGATGACCGC GACCGTCGGC CCGATCGCGG GCCCGGCGCT AGGCGGCTGG ATCACGGATA GTTACAGCTG GTCATGGATC TTCTACATCA ACATTCCGGT CGGCATTTTC GCGGCCGGCG TCACGTGGAT GATCTATCGC ACCCGCGAGT CGCCGACCCG CAAACCGCCC ATCGACATGG TCGGACTCGG TCTGCTGATC ACGTGGGTCG CCTCGCTGCA GATCATGCTG GACAAGGGCA AGGATCTCGA CTGGTTTTCG TCGCCGGTGA TCGTGATTCT CGGCATCACC GCGCTCATCA GCTTCGCGTT CTTCCTCGTG TGGGAATTGA CCGAGGACAA TCCGATCGTC GATTTGCGGC TGTTTCAGCA GCGCAATTTT CTCGGCGGCA CGATTGCGAT TTCGGTCGCG TATGGCGTGT TCTTCGGCAA TCTCGTGCTG CTGCCGCAAT GGATGCAGGA GTATCTGAAT TACCGTTCCG TCGACGCCGG TCTCGTCACC GCCCCGCTCG GCATATTCGC GGTGATCCTC GCGCCGGTAA TGGGCCGCGT GCTGCCGCGC TCGGACGCGC GCGTGATCGC CACGATGGCG TTTATCGGCT TCGCGATCGT GTTTTACATG CGCTCGAAGT ATGTGATCGA GATCGACACG TGGCATCTGG TCCTGCCGAC GCTGCTGCAA GGCATTCCGA TGGCGCTGTT CTTCGTGCCG CTGACCGCGA TCATCCTGTC CGGCCAGCCG CCAGGCAAGA TTCCCGCGGC GGCGGGTCTG TCCAATTTCG CCCGCGTATT TTGCGGCGCG GTGGGCACCT CGGTCGCCGG CAACGAATGG AACAACCGCA CCGTGCTGCA TCACGCGCGG CTCACCGAGC AGGCCTCCAT CAATAACCCG ACGTTCAATC AGCAGATCGA TTCGACCCAG TCGCTGCTGC ATATGAATCC GCAATCGGCC CATGCGTTGT TCGATTTCAC CGTCAACACG CAGGCGGCCA TGATGGGCCT GAACGATATC TTCTTCATCT CGGCGGTCAT CTTCATTCTG ATCATTCCGC TGATCTGGAT CACGCGGCCG GCCAAGGGCG GCGGCGGCCC GGACGCGGCC GGCGCGCACT GA
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Protein sequence | MKYNLNAASP RHTDPENRLS QPPSAPAAAP PAPPPPLKGG QLVLATIAVA LATFMNVLDT SIANVAIPTI SGNLGVSVDE GTWVITVFAA ANAVSIPLTG WLTQRIGQVK LFVGAILMFV LASWLCGIAP TLPILLLARV FQGAVAGPLI PLSQAILLGS YPKEKSSTAL SLWAMTATVG PIAGPALGGW ITDSYSWSWI FYINIPVGIF AAGVTWMIYR TRESPTRKPP IDMVGLGLLI TWVASLQIML DKGKDLDWFS SPVIVILGIT ALISFAFFLV WELTEDNPIV DLRLFQQRNF LGGTIAISVA YGVFFGNLVL LPQWMQEYLN YRSVDAGLVT APLGIFAVIL APVMGRVLPR SDARVIATMA FIGFAIVFYM RSKYVIEIDT WHLVLPTLLQ GIPMALFFVP LTAIILSGQP PGKIPAAAGL SNFARVFCGA VGTSVAGNEW NNRTVLHHAR LTEQASINNP TFNQQIDSTQ SLLHMNPQSA HALFDFTVNT QAAMMGLNDI FFISAVIFIL IIPLIWITRP AKGGGGPDAA GAH
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