| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5514 |
|---|
| Symbol | |
|---|
| ID | 6279500 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 1716884 |
|---|
| End bp | 1718365 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642616596 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001889239 |
|---|
| Protein GI | 187920208 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.333875 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.197216 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCTGTTT CCATTTCCAA CGGAAAGCTG GCTGTATGGG CAGGACGACA TTCCTTGATC
GTCGGCGTTC TGGGCACTTT AATGGCGCTC GCGGTGACAG CAATCAGCCT CGCCACGCTT
CAGGCCGCGA GGAACCAGGC ACTCGACCAT GCACACGACA CGTCTGGAAA CGTGACCTCA
GTCCTCGTCA GCAACATCGA GCGGACCTTT GAAACGTCCG ACAATGCCCT TCTGACATTG
ATTGCCGCCT GGCAGAATCC TGCCGTGCAA AGCATGGACT CCGCAGATCG GCATAAGATT
TTCTTTAGCA GTACCTCGGC CAGGTACTTG ACGGGTGCGG GCGTTACAGA CAGTAGCGGC
TCGTTAATCG ATGGATGCTG CGCGAATTCC CATCACTGGA ATTTTAGTGA CCGGGACTAT
TTCGTGGTTC ACCGCGAGTC GCCAAACGCG GGGCTTTATC TGTCATCGCC TTACCGTGCA
CGGTCGAGAA GCGGAGTCGA AGCCATCGCG TTGTCCAGAC GTGTCAATCA GCCCGACGGC
TCATTCGGCG GTGTCGTCAT GGTCGCGATC GACCTTGCCT ATTTCCGTCA GCTTCTCTCA
AAGCTCGATG TGGGCCCTCA CGGCGTAAGT GCGATCGTCC GTACCGACGG TACGGTAATA
GCAAGAAATC CCCCTCTCAG CACGGCTCAG ACGATCAAAT CGGCGACTTT TTTCTCGCGT
ATGGTGAACC ACGATTCCGG TTTCTATGCC GCGCGATCGT CTATCGACGG AACCGTTCGT
CTATATACCT TTCAGCGTAT TCCCGGCACG CCCCTCATCG CCGTCGTCGC ACCCGCGGAA
ACCGATATAT TGGCCGGCTC CAGACGCATG GCCTGGATGG TCGGCGTCTC CACCGCAACC
ATCGGCATTG CGTTTTGCGT AGTGGTATGG CTGCTTGCGT TTGCGCTCCG GGAGCATGTG
AAGACACAGG TCCTGCTGAC CGAGCTTACC CAGACAGACC CGTTGACCGG TGTCAGAAAC
CGCCGTGCCC TTGATGAGTT TCTGGAAAAC GAGTGGGAGA GGCTTCGCCG CAACGAGAGC
TGCCTGTCGG TGCTTTTCAT CGATGCCGAC CATTTCAAGC AATACAACGA TAGTTACGGC
CACGCACAAG GCGACCTCGC ATTGAAACAT CTTGCCGCGT GTATCAGACG GCATGCGTGC
CGCCGTGGCG ACCTTACCGC GCGGTACGGC GGCGAAGAAT TCGTCGTTGT GTTGCCCGAC
ACCGATGAAA CTGGCGCGAT GCAAGTGGCC GAAGCGATAC GCCATGAGGT CGAATCCGGG
CCAATCCATC TTTCCGAATC GCTGGCACGG TTTACGGTGA GCATCGGCTG CGCCACTGGC
CGACGTGCGT ACCCTCGATC GCTTGCTGAG CTGACAAATA AGGCCGATTC CGCGCTGTAT
GCGGCTAAAC GCGGCGGCAG AAACGCTGTC GTGCCTGGTT GA
|
|---|
| Protein sequence | MSVSISNGKL AVWAGRHSLI VGVLGTLMAL AVTAISLATL QAARNQALDH AHDTSGNVTS
VLVSNIERTF ETSDNALLTL IAAWQNPAVQ SMDSADRHKI FFSSTSARYL TGAGVTDSSG
SLIDGCCANS HHWNFSDRDY FVVHRESPNA GLYLSSPYRA RSRSGVEAIA LSRRVNQPDG
SFGGVVMVAI DLAYFRQLLS KLDVGPHGVS AIVRTDGTVI ARNPPLSTAQ TIKSATFFSR
MVNHDSGFYA ARSSIDGTVR LYTFQRIPGT PLIAVVAPAE TDILAGSRRM AWMVGVSTAT
IGIAFCVVVW LLAFALREHV KTQVLLTELT QTDPLTGVRN RRALDEFLEN EWERLRRNES
CLSVLFIDAD HFKQYNDSYG HAQGDLALKH LAACIRRHAC RRGDLTARYG GEEFVVVLPD
TDETGAMQVA EAIRHEVESG PIHLSESLAR FTVSIGCATG RRAYPRSLAE LTNKADSALY
AAKRGGRNAV VPG
|
|---|
| |