| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5487 |
|---|
| Symbol | |
|---|
| ID | 6279846 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 1690901 |
|---|
| End bp | 1691728 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642616572 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_001889215 |
|---|
| Protein GI | 187920184 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.341172 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAAG CAACTAGATC GACCCCGGAT CACGGGTTAC GCTGCCAACC GATGAACGTC
GTTTTCACCG ATGACGCGCC GAATTTAACG CAGGGATTCC GGCTCGTTAT ACCGACGGGC
AGCACTGTTG TGCAGGCTGC GGGCTGCGAC GACATCGGAA CGAGTCAATC CATCCTGATA
AGTGCGCCAT TTGTCGCAAT TATTCCTTGT GCGACGCCGT TGGCCACGAG CGCCGACCAC
GATCCAAAGG GATGGGTTAT CGCACTCAAA CCGAGCGTAC TTGGGCAAGT CTCGCAAGAA
TCGTTTGGCA TCGTTCCGAA ATGGTCGAAG TTTTGGGATC CGTTCCTGCG CGAGGCCGCA
GATACATTGG GTGCTTTGAA TAGCGCGGAT CTTATCGACA CCGCCTGCGC CGACGCTTTT
GCCGATGTCA TTTCGATGCA CATCGCTCTG CGCTACGGGC ACTGTGCAGG CGCGGAGGAG
CCGGACATGC CGATTACGCG TCAAAAGCTG GCTCGTATTC AAGCCTTCGT TCATGAGAAC
ATAGCCGAAA CCATTTTGGT CGAGCAACTC GCAGTTCTGG TGCACATGAG TGCTTCAAAG
TTTGCACGCG TCTTCAAGAT TGCGACCGGT AACCCGCCCC ATCTATATGT GACACTCGAA
CGAGTGAAAT TCGCCAGGGC GATGTTATGC GAGGAGGCCA TTCCGTTGGT TGACGTTGGC
GCGCGTGCGG GGTTTCAGAC TCAGCAGCAT TTCACCGACG TGTTTCATCG ATACACCGGT
GTGACGCCTC GCGCATTCCG ACTTGCTCAT CGGGCCGTCG GCAGATGA
|
|---|
| Protein sequence | MKQATRSTPD HGLRCQPMNV VFTDDAPNLT QGFRLVIPTG STVVQAAGCD DIGTSQSILI
SAPFVAIIPC ATPLATSADH DPKGWVIALK PSVLGQVSQE SFGIVPKWSK FWDPFLREAA
DTLGALNSAD LIDTACADAF ADVISMHIAL RYGHCAGAEE PDMPITRQKL ARIQAFVHEN
IAETILVEQL AVLVHMSASK FARVFKIATG NPPHLYVTLE RVKFARAMLC EEAIPLVDVG
ARAGFQTQQH FTDVFHRYTG VTPRAFRLAH RAVGR
|
|---|
| |