| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5486 |
|---|
| Symbol | |
|---|
| ID | 6279150 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 1690075 |
|---|
| End bp | 1690605 |
|---|
| Gene Length | 531 bp |
|---|
| Protein Length | 176 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642616571 |
|---|
| Product | membrane protein of uknown function UCP014873 |
|---|
| Protein accession | YP_001889214 |
|---|
| Protein GI | 187920183 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4803] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.648729 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 0.796721 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGATC TAGTCGTTGT AAGTTTCAAA GGCGAAGACA CGGCCGACCA GGTGCTGACC
AAGCTCCAGC AGATGCAAAA GGAACACCTG ATCGACCTTG AGGATGCCTG CATCGTCGTC
CGCAGCGCGA AGGGAAAAAT ACACCTCAAG CAATCGGTCG ATCTCGTCAA GTTCGGCGCG
CTCAGCGGCG CGGCCTGGGG TGGTTTGTTT GGTGCACTGG TTGGGGTAAT GTTGCTCAAT
CCGCTCGCCG GGTTGGCAAC AGGCATGGCC ATCGGTGCGG GCACGGGCGC GCTGTCGGGC
GCGCTCTCAG ACTATGGAAT CGATGACGAT TTCATGTGTT CGACGGGTCA GAACATTGAG
CCGGGTTCAT CGGCGCTCTT CATCCTCGTG CGTCGCGTGA ATTTCGACAA GGTCTTGCCG
GAGCTGAAGC CTTTCGGCGG TAAGGTATTA AAGACATCTC TCACGAACGA TCAGGAGGAA
CGCCTGAAGA AGGCGCTAGA GGACCTGAAC AGCAGTGGCA CGACAGCATG A
|
|---|
| Protein sequence | MSDLVVVSFK GEDTADQVLT KLQQMQKEHL IDLEDACIVV RSAKGKIHLK QSVDLVKFGA
LSGAAWGGLF GALVGVMLLN PLAGLATGMA IGAGTGALSG ALSDYGIDDD FMCSTGQNIE
PGSSALFILV RRVNFDKVLP ELKPFGGKVL KTSLTNDQEE RLKKALEDLN SSGTTA
|
|---|
| |