Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_5454 |
Symbol | |
ID | 6279410 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | + |
Start bp | 1655961 |
End bp | 1658030 |
Gene Length | 2070 bp |
Protein Length | 689 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642616539 |
Product | RNase II stability modulator |
Protein accession | YP_001889182 |
Protein GI | 187920151 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAAGA CTGTTTGCCG ACTCCGCCTG CAAGGCGGCC ACCGGCACAC ACCGCCCGGG GACCTCATGA ACGACGACCA ACACGAGCAG GTGCTATTTG CCCAGTTCGG CACAAGCAGT CCATGCTGGC GTCTGTCGAA CGACAGCAAC GCGCTCGAAC TCACGCCCGT CACTGGCGAC GTGCCGGCTA ATGTCGCCAT TCCGCTGAAT CCTCAGCAGG CTTCGCAAAT CCGCTGCCTC ACTGGCGTGA CCTCGCACCT CGTGCTCGAC GTGCGGCTGT TCGGCGAACC GTTGCGTTTG CATCTGGTCG GTAAGAAGCT CAGCAGCAAC AGCTGGGCCG GCACCGCATC GGCCTACGAC GACACCGAAT CCGTCGCCCG CGATCTGGTC CACGGCCTCT CGTTTGCCGA ACAAGTGGTG TCCGAAGTGA ATTCGGTCGT CGTGATCGTC GACCGGCATG GTCGAATACA GCGCTTCAAC CGTCTTGCCG AGGAACTCAC GGGCGTCAAG GAAGAGAACA TCGTCGGCCG CAACGTCTGG GCGTTGTTCA TGTCCACCGA AGACGGCGCA GCCTCCAGCC AGAACATTGC GGGCTTCTTC AATCGCGGCG TGTCGTACGA AGTCGAGCGG CGCGTCAAGA CAGTGCATGG CGAGCGGCTC TTTTTGTTCC GCAATAAGTT CGTGCAGAGC GGCAGCGGCA TCGACGAACA ATTCCTGATC TGCTCCGGCA CCGACATCAC CGAGGAACGG CTCGCGCAGG AACGCCTCAC CCAACTGGCG AACACCGACT CGCTCACCGG CCTCGCGAAT CGCAACGCGA TCCAGGACAA GATCCGCGCC GCCATCGAAG ACGCCGCGCC GGGCGAAGCC GTCGGCGTGC TGTTCCTCGA CCTCGACAAC TTCAAGAAGG TCAACGACCA CTACGGCCAT GTCTTCGGCG ACCGCCTGAT CCGCGATGTC TCGTCGGCGA TCAGCGAGTG TCTGAATGAA GGCGATACGC TCGCGCGGCT CGGTGGCGAC GAATTCATCG TGCTCGCCGC CAAGGGCACG GCGCACGAAC TCGAAACCAC CGCGCAGCGC ATTCTCGAAC GCATGCGCAC GCCGTTCGCC CTCGGGCTCG TGGAGGTCTA CACCGGCTGC TCGATCGGCA TCGCGCGGTA TCCGGAACAC GGCGACAGTC TCGAATCGCT GATCCGTTCG GCCGACACGG CCATGTACGT CGCCAAAGAC GAAGGCAAGC GCACGCACCG CGTGTTCTCG CCGGAAATGA ACCGTCGCGT CGCCGAGTAC ATGTGGCTCG ACACCAACTT GCGGCGCGGG CTCGAAGAAG GCCAGCTGAC GCTGCACTAC CAGCCGAAAC TGTCGCTCGC CACCGGCGTG GTGCAAGGCG TCGAAGCGCT GGTGCGCTGG AATTCGCCGG AGCGCGGGCA GATCATGCCG AGCGAGTTCA TCCGTTACGC GGAAGAGTCC GGGCTGATCG GCGTGCTGGG CCGCTGGGTC ATGGAAACGG CCGCGAAACA GGCCGCCAAA TGGAAGGCGG ACGGCTACAA CCTGCGCATC GCGATCAACG TGTCGGCGCG GCAACTGGTC GATACGGCGG TCGTCCGCCA TTTCAGCGAG GCGCTGCAGA ACGCCAGGCT CGACCCCTGC CTGATCGATC TCGAACTGAC CGAGAGTTGC CTGATCGAAG ACGAAACGGC GGCGATCGAT CTGATCAGGC AGTTCCGCCA GCTCGGCGCG CAGGTTCATC TGGACGATTT CGGCACGGGG TATTCGTCGC TCTCGCAGCT CGGCCGGATT CCGCTCGACG TCATCAAGCT CGACCGCAGC TTCGTGCGCT CGATCAACGC CGACACCAAA GCGCAGGCAC TGGTGCGCTC CATGGTGGCC GTCGCGCAGG AATTGAATTT CAAGGTGGTC GCCGAAGGGA TCGAGACCGA GTCGGAAGAA GTGTTCATGA AGGGCCTGGG AGTGGATTAC GTGCAGGGCT TCCTGTACGG TCAGGCCATG CCGGCGGCTG AATTTGAACG CTGGCTGCAG GATAGACAGA AGCTCAGGCT GATTGCCTGA
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Protein sequence | MMKTVCRLRL QGGHRHTPPG DLMNDDQHEQ VLFAQFGTSS PCWRLSNDSN ALELTPVTGD VPANVAIPLN PQQASQIRCL TGVTSHLVLD VRLFGEPLRL HLVGKKLSSN SWAGTASAYD DTESVARDLV HGLSFAEQVV SEVNSVVVIV DRHGRIQRFN RLAEELTGVK EENIVGRNVW ALFMSTEDGA ASSQNIAGFF NRGVSYEVER RVKTVHGERL FLFRNKFVQS GSGIDEQFLI CSGTDITEER LAQERLTQLA NTDSLTGLAN RNAIQDKIRA AIEDAAPGEA VGVLFLDLDN FKKVNDHYGH VFGDRLIRDV SSAISECLNE GDTLARLGGD EFIVLAAKGT AHELETTAQR ILERMRTPFA LGLVEVYTGC SIGIARYPEH GDSLESLIRS ADTAMYVAKD EGKRTHRVFS PEMNRRVAEY MWLDTNLRRG LEEGQLTLHY QPKLSLATGV VQGVEALVRW NSPERGQIMP SEFIRYAEES GLIGVLGRWV METAAKQAAK WKADGYNLRI AINVSARQLV DTAVVRHFSE ALQNARLDPC LIDLELTESC LIEDETAAID LIRQFRQLGA QVHLDDFGTG YSSLSQLGRI PLDVIKLDRS FVRSINADTK AQALVRSMVA VAQELNFKVV AEGIETESEE VFMKGLGVDY VQGFLYGQAM PAAEFERWLQ DRQKLRLIA
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