Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_5453 |
Symbol | |
ID | 6278317 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | + |
Start bp | 1651285 |
End bp | 1655799 |
Gene Length | 4515 bp |
Protein Length | 1504 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642616538 |
Product | DEAD/H associated domain protein |
Protein accession | YP_001889181 |
Protein GI | 187920150 |
COG category | [R] General function prediction only |
COG ID | [COG1201] Lhr-like helicases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.397244 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTTTCGC CGCCTCTGGA TATGGCACGT CCCGCCCCCA ACTATGCAAG CATGACTTCG GCTTCCTCCA CCACCGCTGC CTTGGGCGCG GCACCCGCCG CCACATCCGT CGCGACGCCC GCTATCGGGC TCTCGACGGC CGGCGCGCTC GCCGATTTCC ATCCCGCGGT CGCGAGCTGG TTCCTCAAAA CCTTCCCCGC GCCGACCGAC GCCCAGGCCG CCGCGTGGCC GCAGATTCGT CGCGGCCGCT CGACGCTGGT GGCCGCGCCG ACCGGTTCGG GCAAGACGCT CACCGCCTTC CTGTCCGCGC TCGACGATCT GGTCCAGCAA GGCCTCACCA ACGGCGGCGC ATTGCCGGAC GAAACGCTGG TGGTCTACGT GTCGCCGCTG AAGGCGCTCT CCAACGACAT CCGCCTCAAT CTGCAAATAC CGCTGCAAGG CATCGCCGCG GAACTCGACG CGCGAGGCTT GCCGCCGCTG GATATCCGCA CCGCCGTGCG AACCGGCGAC ACCACCCAGC GGGAACGCAA CGCGCTGAAA AAGCGCGCGC CGCATATTCT GGTCACCACG CCGGAATCGC TTTACGTGCT GCTCGGTTCG GACTCCGGCC GCCGCATGCT CTCGACCGTG CGCACGGTGA TCGTCGATGA AATTCACGCG CTCGCCGGCG GCAAGCGCGG CAGCCATCTG GCGCTCAGCC TGGAACGGCT CGATGCGCTG TGCCAGCGGC GCTTGCCGCG TATCGGTCTG TCGGCGACGC AAAAACCGGT GAGCGCGGTC GCGCGCTTTC TGGTGGGCGG CGGCAGCATC GACAGCGGCA TTCCCGCCGA TTGCGCGATC GTCGACGTGG GTCATATTCG CGAACGCGAT CTGGCGCTCG AGATTCCGCC CGTGCCGCTC GAAGCGGTCA TGCCCAACGA AGCGTGGGAG CGCGTCTACG ATCGTCTCGC CGAACTGGTG GCGATGCATC GCACCACGCT GATTTTCGTC AACACACGCC GCATGGCCGA GCGTGCCGCG CGTCATCTCA CCGAACGGCT GGGCAAAGAC GCGGTCGCCG CGCATCACGG CAGCCTCGCG AAAGAACATC GTTTCGATGC CGAACAGCGC CTGAAACGCG GCGAACTGCG CGTGCTGATC GCCACGGCTT CGCTGGAACT CGGCATCGAT ATCGGCGACG TCGATCTGGT TTGCCAGATG GGTTCGCCCC GCGCGATCGC GCCGTTCCTG CAACGCGTCG GACGCTCGGG ACACCATGTC GGCGGCATGC CGAAAGGCAG GCTGTTTCCG AATTCGCGCG ACGATCTGAT CGAATGCGCC GCGCTGCTCG ATTGCGTGCG GCGCGGCGAA CTCGACGCGC TGCGCATTCC GCGCGCGCCG CTCGATGTGC TGGCCCAGCA GATCGTCGCG GAAGTATCGA GCGCCGAGTG GAACGAAGAC GCGTTGTTCG AACTCATGCG GCGCGCCGCC CCCTACGCGG ACCTGACGCG TGAGCAGTAC GACGCCGTGC TGCACATGCT CGCCGAAGGC TACACGAGCC GCAACGGTCC GCGTGCCGCT TACGTTCATC GCGACGTGGT GAGCGGCACG CTGCGCGGCC GGCGCGGCGG CAAGCTGGTC GCGGTCACGT CGGGCGGCAC AATTCCCGAG AACGCCGACT ACGCCGTGGT GCTCGAACCG CAAGCGATCA ACATCGGCAC CGTCAACGAG GATTTCGCCG TCGAAAGTCT GGCCGGCGAC GTGTTTCAAC TCGGCAATGC GTCGTACCGG ATACTGCGGA TCGAAAGCGG GCGCGTGCGG GTCGAGGACG CGCAGGGACA GCCGCCGAAC ATTCCGTTCT GGCTCGGCGA AGCGCCGGGG CGCAGCGACG AGTTGTCGTT CGGCGTCGCG CGTTTGCGCG AACAGATCGG GCGTCTTCTC GACGATAACA AGGCGGCGAA GGAAACCGAC ACCGCAGCAG AAACGCTACC CGCCCGCATT GACCAAGCGA TCGACTGGCT GGTCGACAAC CTGCATCTCG ACGAAGCCGC CGCGCGCCAG ATCGTCGACT ACCTCGCCCG CGCGCGCGCC GCGCTCAGCG TGCTGCCGAC GCAAAATACA CTGGTCATGG AGCGTTTCTT CGACGAATCC GGCGGCACGC AGCTCGTGAT CCACGCGCCG TTCGGCAGCC GCGTCAACCG CGCGTGGGGC CTCGCGCTGC GCAAACGGTT TTGCCGCACT TTCAACTTCG AGCTGCAAGC CGCCGCCACC GAGGACGCGA TCGTGCTGTC GCTGACCAGC AGCCATTCCT TCGTGCTCGA CGAAGTATGG CGTTATCTGC ATTCGAACAG CGCCGAGCAT CTGCTGATTC AGGCGCTGCT CGATGCGCCG CTGTTCGGCG TGCGCTGGCG CTGGAACGCG ACCACCGCGC TCGGCCTGCC GCGCTACACC GGCGGGCGCA AAACCGCGCC GCAATTGCAG CGCATGCGCA GCGAGGATCT GCTGGCGAAC GTGTTTCCCG AACAGGCCGC GTGTCTTGAG AACGTGGTCG GCGAACGGGA ACTGCCGCAC CATCCGTTAG TGGACCAAAC CGTCGACGAC TGTTTGCACG AAGCGATGGA CAGCGAACGC TGGCTCGCGC TGCTGCGCCG TATCGAACAG GGCGACGTGC AACTGGTCGC GCGCGATTTG CCGGCGCCCT CGCCGCTCGC CGCCGAAATC CTCAACGCGA AACCGTACGC CTATCTGGAC GACGCGCCGA TCGAGGAGCG CCGCACGCAA GCCGTGCTGA ACCGCCGCTG GACCGACCCG TCGAGTGCCG ACGATCTCGG TGCGCTCGAC GCGGAGGCGA TCGAAAGCGT GCGCGACGAG GCGTGGCCGC AAGCGCGCAA CGCCGATGAA ATGCACGAAG CGTTGACCGG ACTTGCGTGC ATCACCGAGA GCGAAGCGCG CCGCAACGAA GGCTGGCCGG CCTGGCTTGC GTCGTTGGCT GAATCCGGGC GCGCCACCCG CTTGCAGCTC GCCCACGATT GCGCCCTGTG GCTGCCGGTC GAACGCGTCA CCTGTTTTCA GGCGCTCTAT CCGCCCGCTG AATTCGCGCC GGCGCTCGCC GCGCCGAAAG GCTACACAGA AAGCTGGAAC GCCGACGACG CACTCATCGA CGTGCTCCGT GCGCGTCTGA CCGGCTTCGG CCCGCTGCCT GTCGACGCGA TTGCCGAAGC GCTGAAGCTG CCGGCCGCAT CGGTCGAACA GAGCCTGACG CGCCTCGAAG CCGAAGGCTA CGTGATGCGC GACCGCTTCA CGCCGCAAGC CGCCGAAGAA GAATGGTGCG AACGGCACCT GCTCGCACGG ATACACCGTT ACACCGTGAA ACGCTTGCGG CGCGAGATCG AACCGGTGGA ACGGCACGAC TTCATGCGCT TTCTGTTCGA GTGGCAGCAT CTGACGCCGG ACACGCGCAG CGAGGGGCGC GAGGCGCTGG CCGCGGTCCT CGAACAGCTC GAAGGCTTCC AGGCCGCGGC GGCCGCCTGG GAGGAAGACA TCCTGCCCGC ACGCGTGAAG GCCTACACGA ATACTTCGCT CGACGAACTA TGCCGGGCCG GCAAGATAGT CTGGACGCGC CTGACGGAAC GCGCGCGCGG CGCCGCCGGG CCGATCCGCA GTACGCCGAT CGTGCTGCTG CCGCGCGCGC AAGTGCGCCT ATGGAGCGCG TTGCTCGATC CGTCGAAACA ACCGGAGTTG TCGGCGCGCG CGCAAAGCGT GTATGACACG CTCGTGCAAC ACGGCGCGAT GTTCTTCGAC GAATTGCTCG CCGAAGTTCG CGTATTGCGT ATGGAGTTGG AGAGCGCGCT GGGCGAGCTG GTGGCCGCGG GTCTCGTGAA CTCGGACAGC TTCGCGGGCT TGCGCGCCTT GCTGAAGCCG GTCGCCAAAC GCAACGCGTT TTCCAGCAAC CGGCGCGCGC GTTCGAGCGC GCTGATCGGC GGTATGGACG ACGCCGGACG CTGGGCGCTG GTCAACCGCC CCTCCACTGG TGCTGCGGCA GAGCCTGTGC CGGAGCGCCG CCGGCAATTG CCGCCCGAAG TACTCGAACA CGTCGCAATG ACGCTGTTGC GCCGTTATGG TGTGGTGTTC TGGCGTCTGC TCGAACGCGA AGCCGAGTGG CTGCCGCCGT GGCGCGACCT GCTGCGCGTT TTTCAGCGGC TCGAAGCGCG TGGCGTGATT CGCGGCGGAC GCTTTGTGAA TGGCCTCGCC GGCGAACAAT TTGCGCTGCC CGAAGCGATT CCCGTGCTGC GAGAAGTTCG GCGGCATGCG AACGACGGTG CTTTTGTCTG CGTCGCCGGA ACTGATCCGT TGAATCTGGC GGGTACTTTG CTGGTCGGCG AACGTGTACC CGCAGTAGCG GGAAACCGGA TTCTGTATCG CGACGGCGTC GTGGCGGCCA CGCTCGTCGC GGGGACTTTC TGGTTCGACG CGTTACTGGA AACGGTTCCC GCAGAAAGGG AGCGGGCTCG CGCGTGGCTG GCGCGGCGAT TTTAG
|
Protein sequence | MLSPPLDMAR PAPNYASMTS ASSTTAALGA APAATSVATP AIGLSTAGAL ADFHPAVASW FLKTFPAPTD AQAAAWPQIR RGRSTLVAAP TGSGKTLTAF LSALDDLVQQ GLTNGGALPD ETLVVYVSPL KALSNDIRLN LQIPLQGIAA ELDARGLPPL DIRTAVRTGD TTQRERNALK KRAPHILVTT PESLYVLLGS DSGRRMLSTV RTVIVDEIHA LAGGKRGSHL ALSLERLDAL CQRRLPRIGL SATQKPVSAV ARFLVGGGSI DSGIPADCAI VDVGHIRERD LALEIPPVPL EAVMPNEAWE RVYDRLAELV AMHRTTLIFV NTRRMAERAA RHLTERLGKD AVAAHHGSLA KEHRFDAEQR LKRGELRVLI ATASLELGID IGDVDLVCQM GSPRAIAPFL QRVGRSGHHV GGMPKGRLFP NSRDDLIECA ALLDCVRRGE LDALRIPRAP LDVLAQQIVA EVSSAEWNED ALFELMRRAA PYADLTREQY DAVLHMLAEG YTSRNGPRAA YVHRDVVSGT LRGRRGGKLV AVTSGGTIPE NADYAVVLEP QAINIGTVNE DFAVESLAGD VFQLGNASYR ILRIESGRVR VEDAQGQPPN IPFWLGEAPG RSDELSFGVA RLREQIGRLL DDNKAAKETD TAAETLPARI DQAIDWLVDN LHLDEAAARQ IVDYLARARA ALSVLPTQNT LVMERFFDES GGTQLVIHAP FGSRVNRAWG LALRKRFCRT FNFELQAAAT EDAIVLSLTS SHSFVLDEVW RYLHSNSAEH LLIQALLDAP LFGVRWRWNA TTALGLPRYT GGRKTAPQLQ RMRSEDLLAN VFPEQAACLE NVVGERELPH HPLVDQTVDD CLHEAMDSER WLALLRRIEQ GDVQLVARDL PAPSPLAAEI LNAKPYAYLD DAPIEERRTQ AVLNRRWTDP SSADDLGALD AEAIESVRDE AWPQARNADE MHEALTGLAC ITESEARRNE GWPAWLASLA ESGRATRLQL AHDCALWLPV ERVTCFQALY PPAEFAPALA APKGYTESWN ADDALIDVLR ARLTGFGPLP VDAIAEALKL PAASVEQSLT RLEAEGYVMR DRFTPQAAEE EWCERHLLAR IHRYTVKRLR REIEPVERHD FMRFLFEWQH LTPDTRSEGR EALAAVLEQL EGFQAAAAAW EEDILPARVK AYTNTSLDEL CRAGKIVWTR LTERARGAAG PIRSTPIVLL PRAQVRLWSA LLDPSKQPEL SARAQSVYDT LVQHGAMFFD ELLAEVRVLR MELESALGEL VAAGLVNSDS FAGLRALLKP VAKRNAFSSN RRARSSALIG GMDDAGRWAL VNRPSTGAAA EPVPERRRQL PPEVLEHVAM TLLRRYGVVF WRLLEREAEW LPPWRDLLRV FQRLEARGVI RGGRFVNGLA GEQFALPEAI PVLREVRRHA NDGAFVCVAG TDPLNLAGTL LVGERVPAVA GNRILYRDGV VAATLVAGTF WFDALLETVP AERERARAWL ARRF
|
| |