| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5435 |
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| Symbol | |
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| ID | 6278281 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 1636727 |
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| End bp | 1638208 |
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| Gene Length | 1482 bp |
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| Protein Length | 493 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642616520 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_001889163 |
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| Protein GI | 187920132 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.403044 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTTCTA TTGAACTACG CACAAGGCAG TCTCTCGCAC TCACGCCGCG TCTTCAGCAA
TCAGTGCGTC TGTTGCAGTT GTCGTCTCTG GAGTTCCAGC AGGAGCTGCG CACCGCGCTC
GACACCAATC CGTTCCTCGA GTACGACTCG TCGGAGACGG AAGACGTGGC GCTGGCCACC
GCGACCTCCG GCGAAGACGG CGGCGCGCTG CCCGCCACCG ACACGGTCGC GAGCGCTGAA
CCCGATTCGC TGCCGGTTGA ATCCGGCAAC AACGACACAC TGGAAAGCGC GGGCCACGAC
GACATGCCCG GCGATTTCTC CGGCGACTAC AGCAGCCGCA GTTCGACCCG CCAGAACGGC
GACTCGGACA GCAGCGATCC CGCCGAATGG GCACGCTCGC AGCCGACCCT GCGCGAGCAA
TTGCACGATT CACTGCGCCT TTACCGACTC GACGACCGCG ACCGCGCGGT GGCCCGCTTT
ATCATCGAAG CACTCGACGA CGACGGCTAT CTGCGTCAGG AACTCTCCGA TCTCGCGGAC
AGCGTCGATC TCGAACCCGA ACTGACGGAA GAAGAATTGC TGGTGGCGCT GCGCCTCGTC
CAATCGCTCG ATCGTCCGGG TCTGGGTGCG CGCTCGTTGT CCGAATGCCT CTTGCTGCAG
GTGAATGCCT TGCCCGCCGA CACGCCTGGG CGCGATGTCG CGCGGCAAGT CGTCGAACAT
CATCTGGAAC GGCTCGCGCG TCGCGAGCAA GCCGAACTGC AGAAACAGAT CGGCTGCAGC
GCCGAAGAAT TGCGCGTGGC CTGCGCGCTG GTGCGCAAGC TCGACCCGAA GCCGGGCAAC
AGCTACGGCC GCACCGAAGA CAACTACGTG GTGCCGGACG TGATCGTGCG TCAGGTCCGC
AACAAGTGGG TCGTGACGAT CAATCCGGCG GTGCAGCCGC GCGCTCGCAT CCATCGCATG
TATGCGGAAC TGTTCGCGCA GTCGGCGGGC GCAAGCCGCT CGCCGCTTGC GCAGCAACTG
CAGGAAGCGC GCTGGCTGAT CCGTAACGCG CAGCAACGCT TCGATACGAT TCAGCGCGTG
GCCGAATGCA TCGTCGCGCA TCAGAAGGCC TTCTTCCAGT ACGGCGAAAT CGCGCTCAAG
CCGATGGTGC TGCGCGATGT CGCCGACGAA CTCGGCCTGC ACGAATCCAC CATCTCGCGC
GCCACCGGCA ACAAATATAT GGCCACGCCG CGCGGTATTT TCGAGTTCAA GCATTTCTTC
CCTCGCGAAC TGGGCACGGA AAGCGGCGGT ACCTGTTCAG CCGCAGCCGT GCGCGCGCTG
CTCAAGGAAA TGATCGCCGC GGAAAACACC CACGATCCGC TTTCGGACGT GACGCTCGCC
AAGATGCTCG CCGATCAGGG CGTGCTGGTG GCGCGCCGCA CCGTGGCGAA ATACCGGCAT
CTGATGAAGG TGCCGCCGGC GGAGCTGCGC CGCCAGATTT AA
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| Protein sequence | MPSIELRTRQ SLALTPRLQQ SVRLLQLSSL EFQQELRTAL DTNPFLEYDS SETEDVALAT
ATSGEDGGAL PATDTVASAE PDSLPVESGN NDTLESAGHD DMPGDFSGDY SSRSSTRQNG
DSDSSDPAEW ARSQPTLREQ LHDSLRLYRL DDRDRAVARF IIEALDDDGY LRQELSDLAD
SVDLEPELTE EELLVALRLV QSLDRPGLGA RSLSECLLLQ VNALPADTPG RDVARQVVEH
HLERLARREQ AELQKQIGCS AEELRVACAL VRKLDPKPGN SYGRTEDNYV VPDVIVRQVR
NKWVVTINPA VQPRARIHRM YAELFAQSAG ASRSPLAQQL QEARWLIRNA QQRFDTIQRV
AECIVAHQKA FFQYGEIALK PMVLRDVADE LGLHESTISR ATGNKYMATP RGIFEFKHFF
PRELGTESGG TCSAAAVRAL LKEMIAAENT HDPLSDVTLA KMLADQGVLV ARRTVAKYRH
LMKVPPAELR RQI
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