| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5417 |
|---|
| Symbol | |
|---|
| ID | 6280444 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 1611613 |
|---|
| End bp | 1613049 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642616502 |
|---|
| Product | sigma54 specific transcriptional regulator, Fis family |
|---|
| Protein accession | YP_001889145 |
|---|
| Protein GI | 187920114 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 0.938631 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATACGA CTTGCACGCC TGTCGACACG GAACGCACCG TTCTGTATGT GTCGAATTCG
CCGGATCAGA AACTCGCCGC TTTTCTGGCG GCGTCTGGCT GGCAAGCGGT GCATGCCAAA
AGCACGGCCG TCGCCGAGCG TATGCTCGAA CGCGGCAATA TCAAGGTCGG CCTGGTCGAA
CTGCCTGGCG ACTGCACGTC CCAACATCTT TCCGCGCTGG CGTCCTGCAT GCGGCGCGTC
GAAACCAACT GGGTCGCCCA GATCGCGCCA GGGCAGGCGG AAAACGAACT GGTTAGCCGC
TTTATCCTCG ACTACTGCTT CGACTTCGTG ACCCGGCCGT GGCTCAACGA GCGGCTCGTA
TTCGCGCTTG GCCATGCGCA TGGCCTGTCG AGCCTGCGGC ATGTGGAAGT CGCGCCGGAG
CCTTCGGCCG GCCGGCACGG CATGGTCGGG CAATGCGAGG CGATGCAGCA GTTGTACCGG
CGCATCGACA AATGCGGCGT GACCGACGCG CCGGTATTCG TCGCGGGCGA ATCCGGCACG
GGTAAGGAAC TGACCGCCAA GGCGATTCAC GAACGCTCGC CGCGCGCCGG GCGCCCCTTC
GTCGCGATCA ATTGCGCGGC CATTCCGCCG AGCCTGCTGC AAGCCGAACT GTTCGGCCAT
GAACGCGGCG CGTTTACCGG CGCGCTCCAG CGCAAGATCG GCCGGATCGA GAGCGCGCAC
GAGGGCACGC TCTTTCTCGA TGAAATCGGC GATATGCCGC ATGAATGCCA GGCGGTCCTG
TTGCGCTTCC TGCAGGAAGG CACGATTGAA CGGCTGGGCG GTAACGGCCC GATCAACGTC
GATGCGCGGG TGATTTCGGC GACCCACGTC GATCTGGACA AGGCGGTAGA AGACGGGCGC
TTCCGCTCCG ACCTGTATCA CCGCCTATGC GTGCTGCGTC TGGTCGAGCC GCCGTTGCGC
GAGCGCGGCG GCGACATCAA GCTGCTCGCC AACTATGCGC TGAGCATGTA CAAACAGGAC
GGCGCGCGCA AACTGCGCGG CCTGTCGAGC GACGCGATCG TCGCCATGTC GAACTATCCG
TGGCCGGGCA ACGTGCGCGA GCTGATCAAT TGTGTGCGCC GCGCCGTGGT CATGAGCGAG
GGCCGCTTTA TCACGGCCAG CGATCTTGGG CTGCCGGAAG CCGACAACGG GCCGGCCGTG
ACGCTGGCGG AAATCCGCAG CAAAGCCGAG AAAGATGCGA TCGAACACGC TTTGCAGCGG
CACGGCTACA AGTTGTCCGA AGCGGCGGCC GAACTCGGCA TTTCGCGGGC CACGTTGTAT
CGGCTGATGC ACGCCAACCG GCTGCATCAG GAGCCGGCGG CCGGGCGCGC TTCCAACACC
GCCGGCGGTG CGGATGCCGA TGGCGAGGCG GAGCGGCGGG CGCCTTCGCT GGTGTGA
|
|---|
| Protein sequence | MNTTCTPVDT ERTVLYVSNS PDQKLAAFLA ASGWQAVHAK STAVAERMLE RGNIKVGLVE
LPGDCTSQHL SALASCMRRV ETNWVAQIAP GQAENELVSR FILDYCFDFV TRPWLNERLV
FALGHAHGLS SLRHVEVAPE PSAGRHGMVG QCEAMQQLYR RIDKCGVTDA PVFVAGESGT
GKELTAKAIH ERSPRAGRPF VAINCAAIPP SLLQAELFGH ERGAFTGALQ RKIGRIESAH
EGTLFLDEIG DMPHECQAVL LRFLQEGTIE RLGGNGPINV DARVISATHV DLDKAVEDGR
FRSDLYHRLC VLRLVEPPLR ERGGDIKLLA NYALSMYKQD GARKLRGLSS DAIVAMSNYP
WPGNVRELIN CVRRAVVMSE GRFITASDLG LPEADNGPAV TLAEIRSKAE KDAIEHALQR
HGYKLSEAAA ELGISRATLY RLMHANRLHQ EPAAGRASNT AGGADADGEA ERRAPSLV
|
|---|
| |