Gene Bphyt_5398 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_5398 
Symbol 
ID6279013 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp1589300 
End bp1590187 
Gene Length888 bp 
Protein Length295 aa 
Translation table11 
GC content64% 
IMG OID642616483 
Producttranscriptional regulator, LysR family 
Protein accessionYP_001889126 
Protein GI187920095 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.187721 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.0384441 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAACTCG ATGACATGCG GATTTTCGTC GCCACCGTCG ACGCGCATAA CTTCACGGCC 
GCCGCCAACC GTCTGTCGCT GTCGAAGCAG TTCGTGAGCC GCCGGGTGAT GGCGCTGGAG
GAAACGCTCG GCGTGCAGTT GCTGATCCGC AATACGCGCA AGCTCGCGGT GACCGATCTC
GGCCAGGAGT TTTACGAGCG CGCCAAACGT ATCCTCGGTG AAGTGGAAGA CGCCGAGCAG
GCCATGTCGC TGCGGCGCGC CGGGCCGCGC GGACTGCTGC GCGTGAGCGC GCCGATGTCG
TTCGGCATGG CGCATCTGTC GCCGCTGGTG GCGATGTTTT TGCGTGAGCA CGGCGACGTG
CGCTTCGAGA TGGAATTGAG CGATCGCACG GTGGATGTGG TCGGCGAAGG CTTCGACATG
GCGATCCGGA TCGGCAGCTT GCCGGATTCC ACGCTGATCG GGCAGAAGCT CGTGGATATC
CGGATGGTGG CCTGCTGCAG TCCCGGTTAT GTGCGGCGGC GTGGCGCGCC CAAGGTGCCC
GGCGATCTGG AGCGCCATTC GTGCCTGTTA TACGGGCACG GCGGCGCGGT GAGCTGGGAG
TTTGTCGTCG ATGGCGTGAC GAAAGGCGTC GAGGTCCACG GGCCGTTGCG CGCCAACAAT
GGCGAACTGG TGCGCGATGC GGCCGTCGCG GGCCTGGGGA TTGTTCGGCT TCCTGACTTT
ATCGTCGCCG ACGCGCTCAA AAGCGGCCAG CTCGTGCCAG TGCTCGAAGC ATTCCTGCCC
AGCGCGACGA GCGTCTACGC GGTGTATCCG CAGCACAGGC AAAGCTCCCT CACGATCCGG
GCGTTCGTGG AATTCCTGAG GGAGCATTTG AGCAAGCGGC TGGTTTAG
 
Protein sequence
MQLDDMRIFV ATVDAHNFTA AANRLSLSKQ FVSRRVMALE ETLGVQLLIR NTRKLAVTDL 
GQEFYERAKR ILGEVEDAEQ AMSLRRAGPR GLLRVSAPMS FGMAHLSPLV AMFLREHGDV
RFEMELSDRT VDVVGEGFDM AIRIGSLPDS TLIGQKLVDI RMVACCSPGY VRRRGAPKVP
GDLERHSCLL YGHGGAVSWE FVVDGVTKGV EVHGPLRANN GELVRDAAVA GLGIVRLPDF
IVADALKSGQ LVPVLEAFLP SATSVYAVYP QHRQSSLTIR AFVEFLREHL SKRLV