| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5307 |
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| Symbol | |
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| ID | 6278994 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 1488601 |
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| End bp | 1489686 |
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| Gene Length | 1086 bp |
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| Protein Length | 361 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642616393 |
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| Product | porin Gram-negative type |
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| Protein accession | YP_001889036 |
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| Protein GI | 187920005 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGCCC TCGCCGTGGC AAGTCCGCTG GCCTATGGTC AAACCAGCGT GAGCTTATAT
GGCCGTCTCG ACGCGGGCCT CGAATACCTG AATCACATCA ATAATGGCGC GGGCGGCAGT
TCGAGCCGCT GGAGCGCGGA AGGCGGCGAC TGGGGCACCA GCATGCTCGG CCTCAAAGGC
AACGAAGATC TGGGCGGCGG CCTCAATGCG ATCTTCAACC TCGAAACCGG CTTGCAGGTC
ATGAACGGTA CGACGAGCGG CGGGCGGCTC TGGTCGCGGC GCGCGTTCGC CGGTTTGAAG
AGTGAGCAGT GGGGCACGTT GCAGGCCGGC CGCAATCTGT TTATCGACAG CGACGGCGTA
TGGGAATTCG ATCCGTTCGT GCAGCAGGCG TTTTCGTCGG CCTCGCTCGT GCGTGGGCGC
AACTGGCAGC AAACCAGCAA CAACGTCGAG TATCACAGCC CGGTGTTTTG GGGATTCGAC
GTGCAGGCGC AATATGCGTT CGGCAATCAG GCGGGCGCTT TCAACAGCGG TGCGGCCGGC
GAGTTCGGCC GCTCGGACGG CATCATGCTG ACCTATCACT CGCCGCTCTT CGACGTGCGC
GGCATCTACG ACGAACTGCG CGACAGCAAC GGCCGCTTCA GCAACATCTT CCAGGCATCG
CGCGAATATT TCGCCGGCGT GAACGTGCAT TTCGACTCGG TGAAGATACA GGGCGCCTAC
ACGCATTACT CGGCGCCTGA CTCCCCGGTC GGCGTCGCCG ACTCGGCCGA TCACTACTGG
CTCGGCGCCA CCTATAACTT CCTGCCGCGC TGGGCCATGA CGGCGGGCGG CTTCTACGTG
AAGGTCGGCG ACGGCTCGGG CGATGCCGCG CACGACCCCT CCGGCCACGC GATGATGTAC
GTGCTCGGCA CCACCTACAA CCTGTCGAAG CGCACCTTCC TGTACGGCAC GGTGGGCTAT
GTGCGCAATG GCAGCAACTC GAATTTCTCG CTGGAAGCAT CGCCGCGCGA TGCGACCAGC
AAAACGAGTC CGCTGGTGGG CGAATCGCAG ACCGGCGCGT ATGTCGGGAT GCTGCATCAG
TTCTGA
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| Protein sequence | MAALAVASPL AYGQTSVSLY GRLDAGLEYL NHINNGAGGS SSRWSAEGGD WGTSMLGLKG
NEDLGGGLNA IFNLETGLQV MNGTTSGGRL WSRRAFAGLK SEQWGTLQAG RNLFIDSDGV
WEFDPFVQQA FSSASLVRGR NWQQTSNNVE YHSPVFWGFD VQAQYAFGNQ AGAFNSGAAG
EFGRSDGIML TYHSPLFDVR GIYDELRDSN GRFSNIFQAS REYFAGVNVH FDSVKIQGAY
THYSAPDSPV GVADSADHYW LGATYNFLPR WAMTAGGFYV KVGDGSGDAA HDPSGHAMMY
VLGTTYNLSK RTFLYGTVGY VRNGSNSNFS LEASPRDATS KTSPLVGESQ TGAYVGMLHQ
F
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