| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5299 |
|---|
| Symbol | |
|---|
| ID | 6279372 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 1481224 |
|---|
| End bp | 1483308 |
|---|
| Gene Length | 2085 bp |
|---|
| Protein Length | 694 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642616385 |
|---|
| Product | transketolase |
|---|
| Protein accession | YP_001889028 |
|---|
| Protein GI | 187919997 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0021] Transketolase |
|---|
| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAACG ATCCCGCCCT CGATCAGCTG TGTATCAACA CGATCCGCAC GCTGTCGATG
GACGCTGTGC AAAAGGCCAA TTCCGGTCAC CCCGGCACGC CGATGGCACT GGCACCTGTG
GCCTATCATC TGTGGCAAAA CCATCTTGTG TACGATCCCG ACGAGCCGTT GTGGCCGAAC
CGCGACCGTT TCGTGCTCTC GGCGGGGCAT GCGTCGATGC TGCTGTATTC GCTGCTGCAT
CTGGCCAATG TGAAAGCCGT GGACGACGCG GGCAGGCCCA CCGGCGCGCC CGCCGTCTCG
CTGAACGACA TCGAGCATTT CCGTCAGATC GACAGCAATA CGCCGGGGCA CCCCGAGTAC
CGCATGACTA CCGGCGTCGA GACCACCACC GGCCCGCTCG GCCAGGGACT CGGCAACAGC
GTCGGCATGG CGATGGCGGG GCGCTGGTGC GAGAGCCACT TCAACAAGCC GGATGCGCAG
CTCTTCGACC ATCGCGTCTA CGCGCTATGC GGCGACGGCG ACATGATGGA AGGCATCTCG
CATGAAGCGG CCTCGCTCGC CGGGCATCTG AAACTGTCCA ATCTGATCTG GATCTACGAC
AGCAACCGCG TGACGATCGA AGGCCACACG GACCTCGCGT ACAGCGACGA CGTGGAAACC
CGGTTCCGCG GCTACAACTG GCATACGCTG CGCGTGAACG ACGCCAACGA CGCCGCCGCG
CTCGAAGCCG CTATCGTCGA GGCGAAAAGC ATTACCGACA GGCCGACGCT GATCGTCGCG
CATAGCATTA TCGGCTGGGG CTCGCCGCAC AAGCAGGACA CGTCGTCGGC GCACGGCGAA
GCGCTCGGCG TCGATGAAGT GGCGCTCACC AAGAAGGCGT ACGGCTGGCC CGAGGACAAA
TTCTTCTATG TGCCCGACGG CGTGCACGAG CGCTTCGCGG CGGGCATCGG CGCGCGCGGC
AAGGCGGCGC GCGAGGCGTG GCAGGCGCAG TACGACGCCT ACAACAAGAA GTACCCGGAA
CTCGCGCGTG AATTCGCGCA GATGGAAGCA CACGAATTGC CGGCGGGCTG GGACAGCGAC
ATCCCCACGT TCGATGCCGA CCCGAAGGGC GTCGCGTCAC GCGATTCGTC GGGCAAGGTG
CTCAACGCGA TTGCCGCGCG CGTGCCGTGG ATGATCGGCG GCGCCGCCGA TCTCTCGCCG
TCCACCAAAA CCAACCTGAA ATTCGAGGGC GCGGGCAGCT TCGAGCACGA TAGCTACGGC
GGCTGCAATC TGCACTTCGG CATTCGCGAA CACGCGATGG GCGCGGCGGT GAACGGCCTC
GCGCTGTCGA ATCTGCGTCC CTTCGGCTCC ACGTTCCTGA TTTTCAGCGA CTACATGAAG
CCGCCGATCC GCCTCTCGGC CATCATGGAA GTGCCGTCCA TCTTCGTGTT CACGCACGAT
TCGATCGGCG TGGGCGAAGA CGGTCCGACC CATCAGCCGA TCGAGCAACT GGCTTCGCTA
CGCGGCGTGC CGGGGCTCAC CGTGCTGCGC CCGGGCGATG CCAACGAAGT CGCCGAGGCC
TGGCGTGCGG CGCTGTCGGA TCCGCGGCGG CCGTCGTGCA TCGTGGTGTC GCGCCAGGCG
TTGCCCACCT TGGACCGCAG CCGCTATGCC GCCGCCAGCG GCACGCGGAA GGGCGCTTAT
GTGCTCGCCG ATGCAGCCGA CGGACAGAAG CCGCAAGTGA TCCTGATGGC GACAGGCAGC
GAACTCTCGG TGTGCGTCGA CGTGTACGAG AAGCTCAAGG GCGAGGGCAT CGCGGCGCGA
GTGGTGTCGA TGCCGTCGTG GGACATCTTC GAGCGCCAGG ACGAGGCGTA TCAGGAATCG
GTGTTGCCGT CGGACGTGCA CGCGCGTGTC GCCGTCGAGC AGGCTGCCTC GCTTGGCTGG
GACCGCTATG TGGGCCGCCT CGGCGCGCAG GTGGTAATGC ATACGTTCGG CGCGTCCGCG
CCGCTCGCCG ATCTGAAGAA GAAGTTCGGC TTCACGCCTG AGCATGTGTA TGAGGCGGCG
AAGCAGCAGA TCGAGCGGGT GAAGTCGAAG CGCAGCCCAG AATAA
|
|---|
| Protein sequence | MQNDPALDQL CINTIRTLSM DAVQKANSGH PGTPMALAPV AYHLWQNHLV YDPDEPLWPN
RDRFVLSAGH ASMLLYSLLH LANVKAVDDA GRPTGAPAVS LNDIEHFRQI DSNTPGHPEY
RMTTGVETTT GPLGQGLGNS VGMAMAGRWC ESHFNKPDAQ LFDHRVYALC GDGDMMEGIS
HEAASLAGHL KLSNLIWIYD SNRVTIEGHT DLAYSDDVET RFRGYNWHTL RVNDANDAAA
LEAAIVEAKS ITDRPTLIVA HSIIGWGSPH KQDTSSAHGE ALGVDEVALT KKAYGWPEDK
FFYVPDGVHE RFAAGIGARG KAAREAWQAQ YDAYNKKYPE LAREFAQMEA HELPAGWDSD
IPTFDADPKG VASRDSSGKV LNAIAARVPW MIGGAADLSP STKTNLKFEG AGSFEHDSYG
GCNLHFGIRE HAMGAAVNGL ALSNLRPFGS TFLIFSDYMK PPIRLSAIME VPSIFVFTHD
SIGVGEDGPT HQPIEQLASL RGVPGLTVLR PGDANEVAEA WRAALSDPRR PSCIVVSRQA
LPTLDRSRYA AASGTRKGAY VLADAADGQK PQVILMATGS ELSVCVDVYE KLKGEGIAAR
VVSMPSWDIF ERQDEAYQES VLPSDVHARV AVEQAASLGW DRYVGRLGAQ VVMHTFGASA
PLADLKKKFG FTPEHVYEAA KQQIERVKSK RSPE
|
|---|
| |