Gene Bphyt_5277 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_5277 
Symbol 
ID6277891 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand- 
Start bp1454569 
End bp1455606 
Gene Length1038 bp 
Protein Length345 aa 
Translation table11 
GC content68% 
IMG OID642616363 
Product6-phosphogluconate dehydrogenase-like protein 
Protein accessionYP_001889006 
Protein GI187919975 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1023] Predicted 6-phosphogluconate dehydrogenase 
TIGRFAM ID[TIGR00872] 6-phosphogluconate dehydrogenase (decarboxylating)
[TIGR00873] 6-phosphogluconate dehydrogenase, decarboxylating 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.229554 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value0.749733 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGCTAG GCATGATTGG ATTGGGACGC ATGGGCGCCG ACATGGTGCG GCGCCTGACG 
AAGGGCGGTC AGCAGTGTAT CGCCTACGAC GTGCAGCCGG CGGCGGTCGA GAAGCTGAAA 
CAGGACGGCG TGCCGGGCGC GGCGTCGCTG GAAGACCTCG TGGCGCAACT CGACAAGCCG 
CGCGCCGTGT GGCTGATGGT GCCGGCCGCC GTGGTCGACA TGACGCTCGA GAAGCTCGTG 
CCCTTGCTGG AGCCGGGCGA CATCGTGATC GACGGCGGCA ACTCCTATTA CCACGACGAC 
ATTCGCCGCG GCACCGAACT GGCCGAGCGC AAGCTTCACT ATGTGGACGT CGGCACGAGC 
GGCGGCGTGG CGGGCCGCGA GCGCGGCTAC TGCCTGATGA TCGGCGGCGA GCCGGAGGTC 
GTGAAGCGGC TCGAACCGAT TTTCGCGACG CTCGCGCCGG GTGCCGGCTC GGAGCCGGCC 
ACGCCGGGCC GTGTCGCCGG ATCGAGCACC GCGGACCAGG GCTTCCTGCA TTGCGGGCCG 
CAGGGTGCGG GGCACTTCGT CAAGATGGTT CACAACGGTA TCGAGTACGG CATGATGGCC 
GCGTATGCCG AGGGCTTGAA CATTCTGCAT CACGCCGACG CCGGCAAACA TGCGCGCGAG 
GCCGACGCCG AAACCTCGCC GCTGCGCCGC CCCGAGTTGT ACCAGTACGA TCTGAATCTC 
GCCGACGTCA CCGAGGTCTG GCGGCGTGGC AGCGTGATCA GTTCCTGGCT GCTCGATCTG 
ATCGCCGGGT CGCTCGTGAG CGACGTCGAC CTGAAGAACT ACGCAGGGCG CGTATCCGAT 
TCAGGCGAGG GGCGCTGGAC CGTGGCGGCC GCCATCGACG AAGGCGTGCC TACGCCGGTG 
CTGAGCGCGG CGCTGTTTGC GCGGTTCAGT TCGCGCGGCG AGGCGGATTT CGCGAACCGG 
GTGCTCTCGG CCATGCGGAA CGATTTCGGT GGCCACGCCG AGAAAGCGGC CACGCCGTCC 
GACAAGCCGA AAAGCTGA
 
Protein sequence
MQLGMIGLGR MGADMVRRLT KGGQQCIAYD VQPAAVEKLK QDGVPGAASL EDLVAQLDKP 
RAVWLMVPAA VVDMTLEKLV PLLEPGDIVI DGGNSYYHDD IRRGTELAER KLHYVDVGTS 
GGVAGRERGY CLMIGGEPEV VKRLEPIFAT LAPGAGSEPA TPGRVAGSST ADQGFLHCGP 
QGAGHFVKMV HNGIEYGMMA AYAEGLNILH HADAGKHARE ADAETSPLRR PELYQYDLNL 
ADVTEVWRRG SVISSWLLDL IAGSLVSDVD LKNYAGRVSD SGEGRWTVAA AIDEGVPTPV 
LSAALFARFS SRGEADFANR VLSAMRNDFG GHAEKAATPS DKPKS