| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5243 |
|---|
| Symbol | |
|---|
| ID | 6277576 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 1420249 |
|---|
| End bp | 1421346 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642616329 |
|---|
| Product | basic membrane lipoprotein |
|---|
| Protein accession | YP_001888972 |
|---|
| Protein GI | 187919941 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1744] Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGCC GCCGCCATTT CATCAAGAGC GCCAGCCTGT TGACGCTCGG CAATATTCTG
CCCATCCAGT CGGTGTTCGC CGCGCCGAAG ACCACCGTCG GCGTGATCTA CGTCGGCGCG
CGCGGCGACT ACGGCTACAA CCAGGCGCAA GCGCAAGCCG CCGCGGTGAT CAAGAAGATG
CCTGACGTGA AAGTGGTGGA GGAAGAGAAC GTGCCCGAGA CCATCGCCGT GCAGAAGACG
ATGGAAGCGA TGATCGAACA GGACGGCGCC ACGCTCATCT TCGCGACCTC GTTCGGCTAC
TTCGACCCGC ACGTGCTGAA GATGGCGGCG AAGTATCCGA AGGTGCGATT CGCTCATTGC
GGCGGTTTGT GGAAGCAGGG CAACCCGTCG AACATCACCA GCTACTTCGG CTATATCGAC
GAATGCCAGT ACCTGAACGG CGTGGTCGCC GGCCATATGA CGAAGAGCAA GAAGCTCGGC
TTCGTCGCGG CCAAGCCGAT TCCGCAGGTG CTGCGCAACA TCAATTCGTT CACGCTCGGC
GCGCAGTCGG TCGATCCGTC CATCACGACG CAGGTGATTT TCACGGGCGA CTGGTCGATG
CCGGTGAAGG AAGCCGAAGC CACCAATAGT CTCGTCGATC AGGGCTGCGA TGTGCTGACC
TGTCACGTCG ACGGTCCGAA GGTGGTAGTC GAAACGGCGG AAAAGCGCGG CGCGATGAGC
TGCGGCTACC ACGCGAGCCA GGCCGCGCTC GCGCCCAAGG GTTATCTGAC GGGCGCGGAA
TGGGATTGGG CCACGCCATA CAAGCAACTG GTGACGGGCG CGCAAGCCGG CACGCCGCAA
CCCAACGTCT TGCGCGGCGG CCTGAAAGAA GGCTTCGTGA AGATGTCGCC GTACGGCGCG
AAGGTCACGG CAGCCGCGAA GCAGAACGCC GACTCGATCA GAAGCAGCAT GGTGGCCGGC
AACTTCGTGA TCTTCAAAGG CCCGATGAAG GACAACAAGG GCGGCACGGC GATCGCCTCG
GGCGCGAGTC ACAGTCAGAC CGACTACACG CTGGAGAGCA TGAACTATCT GGTCGCGGGC
GTCGTCGGCC AGATCTGA
|
|---|
| Protein sequence | MTSRRHFIKS ASLLTLGNIL PIQSVFAAPK TTVGVIYVGA RGDYGYNQAQ AQAAAVIKKM
PDVKVVEEEN VPETIAVQKT MEAMIEQDGA TLIFATSFGY FDPHVLKMAA KYPKVRFAHC
GGLWKQGNPS NITSYFGYID ECQYLNGVVA GHMTKSKKLG FVAAKPIPQV LRNINSFTLG
AQSVDPSITT QVIFTGDWSM PVKEAEATNS LVDQGCDVLT CHVDGPKVVV ETAEKRGAMS
CGYHASQAAL APKGYLTGAE WDWATPYKQL VTGAQAGTPQ PNVLRGGLKE GFVKMSPYGA
KVTAAAKQNA DSIRSSMVAG NFVIFKGPMK DNKGGTAIAS GASHSQTDYT LESMNYLVAG
VVGQI
|
|---|
| |