| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5228 |
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| Symbol | |
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| ID | 6277536 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 1403003 |
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| End bp | 1406614 |
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| Gene Length | 3612 bp |
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| Protein Length | 1203 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642616314 |
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| Product | urea carboxylase |
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| Protein accession | YP_001888957 |
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| Protein GI | 187919926 |
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| COG category | [E] Amino acid transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG0511] Biotin carboxyl carrier protein
[COG1984] Allophanate hydrolase subunit 2
[COG2049] Allophanate hydrolase subunit 1
[COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
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| TIGRFAM ID | [TIGR00724] biotin-dependent carboxylase uncharacterized domain
[TIGR02712] urea carboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.120809 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGATTCC GCAAAGTCCT GATCGCCAAT CGCGGCGAGA TTGCCTGCCG CGTGATTCGC
ACGCTCAAGC GGCTGGGCAT CGCGTCGGTC GCGGTGTATT CCGAAGCCGA CCGCCACGCC
ATGCATGTGA TGCTCGCCGA CGAAGCCGTG TGCATCGGCC CGGCGCTCGC GGCGCAGAGC
TATCTGAACA GCGCGGCGAT TCTCGATGCG GCGCGCGCGT GCGGTGCCGA CGCCGTGCAT
CCCGGCTACG GTTTCCTGTC CGAAAACGCG GCCTTCGCGC AAGCTTGCGA CGACGCGGGG
ATTCGCTTCA TCGGCCCCAC GCCGCAGCAC ATGCGCGAGT TCGGCCTGAA ACACACGGCG
CGCGAACTCG CGCAAGCCAA CGACGTCGCC TTGCTGCCCG GCACCGGCTT GCTGCCCGAC
GTCAGCGCGG CGTTGCGCGA GGCGGAGTCG ATCGGCTATC CGGTGATGCT GAAAAGCACC
GCGGGCGGCG GCGGAATCGG CATGTCGCTG TGCCGCGACG CCGCGCAGCT TGAAGGCGTG
TTTGCATCGG TCGCACGGCT CGGCGAAGCG AATTTTGCCA ACGCGGGCGT GTACGTCGAG
AAGTTCGTGG AAAACGCGCG CCATATCGAA GTGCAGGTTT TCGGCGACGG CAAAGGCGGC
GTGATCTCGC TCGGCGAACG CGATTGCTCG GTGCAGCGGC GCAACCAGAA GGTGATCGAG
GAGACGCCCG CACCTGGGCT TACGCACGCG GAACGCAGCG CGCTGCATGC GAGCGCCGTG
CGTCTCGCTC AAGCCGTGAA GTACAAGTCC GCGGGCACTG TGGAGTTTGT TTTCGATGCC
GACACGCGCC GTTTCTATTT CCTCGAAGTG AACACGCGAT TGCAGGTCGA GCACTGCGTG
ACGGAAGAAA TCACGGGTAT CGATCTGGTC GAGTGGATGA TTCGTGAAGC CGAGGGCGAG
CTTGCGCCGC TCGATACGCT GGCAACGGTG CCGCAAGGCG CAAGCATTCA GGTGCGGTTG
TACGCGGAAG ACCCGCACAA ACAGTTTCAA CCGAGTGCGG GCGTGCTCAC GCACGTCGCG
TTCGCCGCCG ACGCGCGGGT CGATACCTGG GTCGATTCCG GCACGGAAGT CAGCGCGTTC
TACGACCCGT TGCTAGCCAA GCTGATCGTC AAAGGCGAAA CGCGCGAAGC CGGGCTCGCC
GCGCTGCGCG CCGCGCTGGA ACAAACGCAG TTGTACGGCA TCGAGACCAA CCTCGACTAT
CTGCGCGCCA TTGCCGGCTC GGCGACGTTC GCTCGCGGTG AGCAGACCAC CGCGTTCCTC
GGGCGTTTCA TGTTCGCGCC GCATACGATC GACGTGCTCG ACGGCGGCGT GCAGACCACC
GTACAGCAGA CGCCGGGACG CACCGGCTAT TGGGACATCG GCGTGCCGCC GTCGGGCCCG
ATGGACGATC TGTCGTTCCG TCTCGCCAAC GAACTGCTCG GCAATCCCGC CGACGCCGCC
GGGCTCGAAT GCGCGATGGT CGGCGCCACG CTGCGCTTCA ATACCGCGAC GCTTTTCGTT
CTCGGCGGCG CGCCACTCGC CGCCACGCTC GATGGCGCGC CGGTGACGCT CTGGCAGGTC
ACGCGCGCGC CGGCGGGCGC CGTGCTCAAG CTCGGCGGCG TGACGGGCGC CGGCATGCGC
GCATGTCTCG CGCTGAAGGG CGGCCTGCAG GTGCCGGACT ATCTGGGCAG CAAGGCGACC
TTCACGCTTG GCCAGTTCGG CGGCCACGCA GGGCGCGCGC TGCGCAAGGG CGACGTGCTG
CATCTCGCCG ACGAGGCGGG AAGTGGCGCA GCAGGCGCGC AACTGGATAA ATCGCGCGTG
CCGGTCCTGA CGCATGACTG GACGCTCGGC GTGCTCGACG GCCCGCACGG CGCGCCCGAC
TTTTTCACGC CCGACGACAT CGCGATGCTC TACGGCACGC GCTGGACCGT GCACTACAAC
TCTAGCCGCA CGGGTGTGCG CCTGATCGGC CCAAAGCCGC AATGGGCGCG CACGGACGGC
GGCGAGGCCG GGCTGCATCC GTCGAATATT CACGACAACG CCTATGCGGT CGGCGCGGTG
GATTTTACCG GCGACATGCC TGTGATCCTT GGGCCCGATG GTCCGAGCCT CGGCGGTTTC
GTGTGTCCGG TCACGGTAGT GGGCGAGGAG TTGTGGAAGC TCGGCCAACT GCGACCGGGC
GATACGGTGC GCTTCGAACG GATGCCGGTC AAAGCGATGC TTGCCTCGCC CAAGCACGCT
ATGGAGGCCA GCGAAGCGGC GGCTCACGAC TGCATCCTCT ACCGCGACCC GACGGCGGGC
GAGGGCACCG GCGTGGTCTA TCGCCGCTCC GGCGATCAGA ACGTGCTGAT CGAATACGGT
CCGCTCGTGC TCGACCTGAA CCTGCGTTTT CGCGTGCATG CGTTGATGAA CTGGCTCGAC
GCGCACCGCT TGCCGGGCAT TATCGATCTG ACGCCGGGCA TTCGGTCGCT GCAGGTACAT
TTCGATCCCC GCGTGCTGTC GCACGACACG TTGCTCGCGC ATCTGCAACA AGCCGAACGC
GAACTGCCCG CGGTGGACGC GATGCGCGTG CCGAACCGCA TCGTGCATCT GCCGCTTTCG
TGGGACGACC CGTCGACGCG CATCGCAATC GAGCGCTACA TGCAATCCGT GCGTCCCGAC
GCGCCGTGGT GCCCGAGCAA TATCGAGTTT ATTCGGCGCA TCAACGGGCT GAATAGCATC
GACGACGTGA AGCGCATCGT ATTCGACGCG CGCTACCTCG TCATGGGCCT CGGCGACGTG
TACCTCGGCG CGCCGGTCGC GACGCCGCTC GACCCGCGTC ACCGGCTCGT CACGACCAAG
TACAACCCGG CGCGCACGTG GACGCCGGAG AACGCGGTGG GCATCGGCGG TGCGTATCTG
TGCGTGTACG GCATGGAAGG GCCGGGCGGT TATCAGTTCG TCGGCCGCAC CGTGCAGATG
TGGAACCGCT ATCGCACGAC GCGCGAGTTC GAAGCGGGCA AGCCCTGGCT GCTGCGCTTT
TTCGATGAGA TCCGTTTCTA CGAAGTCAGC GAGGCCGAGC TGGCCGAACT GCGCACGGAC
TTTATCGCGG GCCGCGCGAG CCTGAAGATC GAGGAGTCGG TATTCGATCT GGGCGCGTAC
AACCGCTTCC TGAAGGATGA AGCCGATTCG ATTGCCGCGT TCAAAAGCAC TCAGCAAGCC
GCGTTCGACG CGGAACGCGA GCGCTGGGAC GCGGCCGGAC ATGCCGCGTA CGTCGGCGAA
ACGGATGGCG ATGCAGCCGC TGGCGGCAAC CCGGCAAACG ACACGCTCGC GACCGGCCAG
CAAGGCATCG TCGCCGACGT GTCGGGCAGC GTGTGGAAGC TGCTCGTCAA GGAAGGCGAA
CGGGTCGGCG ACGGCCAGGT GGTCGCGATC GTCGAGTCGA TGAAGATGGA AATCTCCGTC
ACCGCGAGCG GCGACGGCGT GATCGAAACG ATCGATTGCG CGGAAGGCGC GGCGGTCGTC
GCGGGTCAAC GATTGATGGT GATGCGCGCC GGCATTGCAG CCGACGCCAC CGAGGAGGCA
ACGTGCAAAT GA
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| Protein sequence | MRFRKVLIAN RGEIACRVIR TLKRLGIASV AVYSEADRHA MHVMLADEAV CIGPALAAQS
YLNSAAILDA ARACGADAVH PGYGFLSENA AFAQACDDAG IRFIGPTPQH MREFGLKHTA
RELAQANDVA LLPGTGLLPD VSAALREAES IGYPVMLKST AGGGGIGMSL CRDAAQLEGV
FASVARLGEA NFANAGVYVE KFVENARHIE VQVFGDGKGG VISLGERDCS VQRRNQKVIE
ETPAPGLTHA ERSALHASAV RLAQAVKYKS AGTVEFVFDA DTRRFYFLEV NTRLQVEHCV
TEEITGIDLV EWMIREAEGE LAPLDTLATV PQGASIQVRL YAEDPHKQFQ PSAGVLTHVA
FAADARVDTW VDSGTEVSAF YDPLLAKLIV KGETREAGLA ALRAALEQTQ LYGIETNLDY
LRAIAGSATF ARGEQTTAFL GRFMFAPHTI DVLDGGVQTT VQQTPGRTGY WDIGVPPSGP
MDDLSFRLAN ELLGNPADAA GLECAMVGAT LRFNTATLFV LGGAPLAATL DGAPVTLWQV
TRAPAGAVLK LGGVTGAGMR ACLALKGGLQ VPDYLGSKAT FTLGQFGGHA GRALRKGDVL
HLADEAGSGA AGAQLDKSRV PVLTHDWTLG VLDGPHGAPD FFTPDDIAML YGTRWTVHYN
SSRTGVRLIG PKPQWARTDG GEAGLHPSNI HDNAYAVGAV DFTGDMPVIL GPDGPSLGGF
VCPVTVVGEE LWKLGQLRPG DTVRFERMPV KAMLASPKHA MEASEAAAHD CILYRDPTAG
EGTGVVYRRS GDQNVLIEYG PLVLDLNLRF RVHALMNWLD AHRLPGIIDL TPGIRSLQVH
FDPRVLSHDT LLAHLQQAER ELPAVDAMRV PNRIVHLPLS WDDPSTRIAI ERYMQSVRPD
APWCPSNIEF IRRINGLNSI DDVKRIVFDA RYLVMGLGDV YLGAPVATPL DPRHRLVTTK
YNPARTWTPE NAVGIGGAYL CVYGMEGPGG YQFVGRTVQM WNRYRTTREF EAGKPWLLRF
FDEIRFYEVS EAELAELRTD FIAGRASLKI EESVFDLGAY NRFLKDEADS IAAFKSTQQA
AFDAERERWD AAGHAAYVGE TDGDAAAGGN PANDTLATGQ QGIVADVSGS VWKLLVKEGE
RVGDGQVVAI VESMKMEISV TASGDGVIET IDCAEGAAVV AGQRLMVMRA GIAADATEEA
TCK
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