| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5213 |
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| Symbol | |
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| ID | 6280183 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 1389392 |
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| End bp | 1390375 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642616299 |
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| Product | surface presentation of antigens (SPOA) protein |
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| Protein accession | YP_001888942 |
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| Protein GI | 187919911 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1886] Flagellar motor switch/type III secretory pathway protein |
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| TIGRFAM ID | [TIGR02551] type III secretion system apparatus protein YscQ/HrcQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.200341 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCCAT TGCGAAATGT GGAACGCGTA TCGCTCGCGC ACGCACAACG ACACAACGTT
GCGGCGCTGC ATTTTGGCAC GCCCTATCAG GTCAGCGTCG GAAAGCGGGC GTTTTCGCTG
CAGTTCGAAG TCTGCCGCGC AAGCTATCCG TTGCGGCTTA ACGGACATGC GGCGGGAGAG
CCTGTCACGC TCGATTGCGA TGCGCAGGCG TTGTTCCCGG AGTTGACGCG GACGTCCCTC
GCACAGGCGG AGGACAGGGC ATGCACATTG ATTTCACAGG TGCTCGACGA GTGGCTAAGC
GCACTCGAAG GCGTGTTCGG GTTCACGGTC GAAATAACAG GCGTGTCGTT CGATGCAGTA
CCGCAACACG GCGCATACGG CCTCGTCCTC ACGCACCTGC GAAGTCATCG CGCTGCGCAC
TTTGCGCTGG ATAGCACGGT AATAGATGGA TGGCTGGCGC GCCAGCCCGT TCACCTCGGC
GATGCGACCG CCCTTGCAAG ACGGCTGGTG GTCCCCGTCT CCGTGTGCAT GGCGGGACCC
GAACTTACGT TGCAGCGCCT GCGCAGAATC AGGCGCGGCG ATGCACTGCT TCTTAACCGT
TTTGACCAGT ACTTGCGTTT GCCGATGCGC CTCGGCGCAC GCCGCATTCT GCTTCAACCT
TCAGGAGAAT ATATGGTGAT AGCCCAACCG ATGATCGACG ATGCCAACCA GTCCGCGGAA
ATGACGAGCG AGCTGATTCC GGCCAGCGCA CTCACGTTTT CATTCGATGC CGTGATCGGC
ACGCTTTCGC TGACGCTCGA CGAGCTCATG CGCCTGCGAA CCGGCTCGAC GGTGTCATTG
CAACAGCCAG TGGGCAGACA TGCAATCAGG CTGCTCTGCC AGGGCATTCC GTTTGCGCGC
GGCGAATTGA TCGATATCGA TGACGCATTG GGCGTACGCA TTGTCGATCT GGCACACATG
TCGGATACGC AAACGACATC ATGA
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| Protein sequence | MSPLRNVERV SLAHAQRHNV AALHFGTPYQ VSVGKRAFSL QFEVCRASYP LRLNGHAAGE
PVTLDCDAQA LFPELTRTSL AQAEDRACTL ISQVLDEWLS ALEGVFGFTV EITGVSFDAV
PQHGAYGLVL THLRSHRAAH FALDSTVIDG WLARQPVHLG DATALARRLV VPVSVCMAGP
ELTLQRLRRI RRGDALLLNR FDQYLRLPMR LGARRILLQP SGEYMVIAQP MIDDANQSAE
MTSELIPASA LTFSFDAVIG TLSLTLDELM RLRTGSTVSL QQPVGRHAIR LLCQGIPFAR
GELIDIDDAL GVRIVDLAHM SDTQTTS
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