Gene Bphyt_5172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_5172 
Symbol 
ID6280422 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp1338296 
End bp1339696 
Gene Length1401 bp 
Protein Length466 aa 
Translation table11 
GC content62% 
IMG OID642616259 
Productmajor facilitator superfamily MFS_1 
Protein accessionYP_001888902 
Protein GI187919871 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGTCA ACGCAGGGCT ACGGCTCGAT CGTTTGCCGA TGTCGGGATT TCATCGGCGC 
ATCATGTGGT TGATCGGCAT TGGTATGTTT TTCGACGGCT TCGACATCTA TGTCGCGTCG
ACCGTGCTCG GTGCAACGCT CAAAACAGGT TTTTCCACAC TCGGGCAGAA CGCGTTATTC
GTATCGCTGA CTTTTGTCGG CATGATGCTC GGCTCGCTCG GCACAGGCTT TCTCGGCGAT
CGCTTCGGCC GCCGCTTTAC CTATCAGGCG AATCTCGCGA TCTTCGGCCT CGCATCGCTC
GGTGCGGCGC TCGCGCCGAA CATGAGCGTG CTGATTGCGT GCCGCTTCGT GATGGGGCTC
GGACTCGGCG CGGAGAACGT GGTCGGCTAT TCGACACTGA CCGAATTCGT CCCGCCGCAA
AAACGCGGCA AGCTGCAAGG GCTCATGGCC GTGTTCGTGG TGTCCGGCTT GCCGGTTGCT
GGGTTGATCG GCCTGTTGCT GATTCCGGCA TTCGGCTGGC GCGCGATGTT CGTTCTGGGC
GGGTTCGGTG CGCTCGGTGT CTGGTATGCA CGCAAGTCGT TGCCGGAGTC GCCGCGCTGG
CTCGAATCGG TGGGCCGTCA CGCCGAGGCG GACGCGATCC TGCGACGCAT CGAAAGCGAA
ATCACCGACG CGCGCGGCGG TCAACCGCTG CCACCTCTTG CTGCTGGAAA GACCTCCGCA
CCGGCCGCTG CATTGATGTC CTTCGGTTCG CTGTTTAGCG GCACGATGCT GCAACGAATG
ATTGTCGGCT GCGTCACGCT GGTGGTCATC AATACTCTGC TGTACGGCTT TGTCACCTGG
CTGCCGACGT TCTTCGTGCA TCAGGGCTTC AGCATCGCAA AGTCGTTCGG CTTCGCGCTC
GTCATGTCGA TCGGCGCGCC GATCGGTTCC GCCATCGGCG CGTTGACGGC GGACTCGTGG
GGTCGCAAAC CGACCATCAT CGGCGCGTCG TTCGCGGCCA TCGTGTTCGG CGCGATCTAT
CCGTTCGTTT CGAATCCGCT GCTGCTGCCC CTCATCGGCC TGTTGCTGAC CATTCCGATC
TACGTGCTGG TGGCGCTCCT GTTCGCAGTC TATGTCCCTG AGCTTTTCCC GACCGAAGTC
CGGCTGCGCG CCTCGGGAAT CTGCAACACG TTGGGACGTG GTGCGACGAT CGTCACGCCG
TTCATCGTGG TCGCTCTGTA TGCGCAGCAC GGCATTGTCG GCGTACTGGC GTTGATGATC
GGTTTGCTTG CGATCCAGAT CGTCGTCGTG GCGTGGCTCG GCGTGGAGCC GACCGGCCAG
CGTCTCGAGG ATCTGCAACC CGCCGACTTA CACACACACG ATGCACTGCA CGCCGACGCG
CACGCATCGT CCCTCAAGTG A
 
Protein sequence
MNVNAGLRLD RLPMSGFHRR IMWLIGIGMF FDGFDIYVAS TVLGATLKTG FSTLGQNALF 
VSLTFVGMML GSLGTGFLGD RFGRRFTYQA NLAIFGLASL GAALAPNMSV LIACRFVMGL
GLGAENVVGY STLTEFVPPQ KRGKLQGLMA VFVVSGLPVA GLIGLLLIPA FGWRAMFVLG
GFGALGVWYA RKSLPESPRW LESVGRHAEA DAILRRIESE ITDARGGQPL PPLAAGKTSA
PAAALMSFGS LFSGTMLQRM IVGCVTLVVI NTLLYGFVTW LPTFFVHQGF SIAKSFGFAL
VMSIGAPIGS AIGALTADSW GRKPTIIGAS FAAIVFGAIY PFVSNPLLLP LIGLLLTIPI
YVLVALLFAV YVPELFPTEV RLRASGICNT LGRGATIVTP FIVVALYAQH GIVGVLALMI
GLLAIQIVVV AWLGVEPTGQ RLEDLQPADL HTHDALHADA HASSLK