Gene Bphyt_5150 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_5150 
Symbol 
ID6279778 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp1314879 
End bp1316528 
Gene Length1650 bp 
Protein Length549 aa 
Translation table11 
GC content58% 
IMG OID642616238 
ProductPAS modulated sigma54 specific transcriptional regulator, Fis family 
Protein accessionYP_001888881 
Protein GI187919850 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.520745 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGAGA ATTCGCTTGC TGACCTGCTC GAAACTCATC CGGTGGGGAT GGCATGGCAA 
CGCGCAGGCG AACTGGTATG GCTGAACGCT GTTGCACGTT CGCTTCTCGA AGCGACCGAC
ACGACAGTGT CGCGCGCCTG TTTAGAAGCT TTGCAGGAAG TCAGTAACGC TGATGGACGC
GGAGTCCTCG TGGCCGGGGC GCAAACTTAC GCGCTCAGCG TGTACCGAAA GGAGCGTGAG
GCTTTGCTTA TGCTGGTTCC TTACGGAGAT AGCACGCGAG TCTTCCCCGG CCTGGACCGG
CTTCAACAGT CCGCCCTTGA CTTCGAAGAA ATTTTTCGAA ACTCATTCGA CGGCATTTTC
GTTGCCGACG GTGCAGGTAT GACACTCATG GTCAACGAAG GCTGCGAGCG CAATTACGAT
CTCAGCGCCG CGGACATGAT CGGCCGTCAC GTCTCGGAGT TCGAGAAAGC CGGCTGGATC
CGGCCAGTGG TTGCGGCCCA GGTTGCACGA ACCGGCCAGC GGATCTCGAC GACGCAGCAT
ACTCACACTG GAAAAACGAT TCTCGTCACT GGCATACCGC TGGTCGACGC GGCAGGCACT
GTTCGCAAGG TCATCATCAA TTCCCGCGAC ACGACCGAGC TACGCCAACT GCAGGACGCA
CTGGCACAGA CTCGGGAAAA GCTCCGAAAG GTCGACGAAG AAAACGAGGC GCTGCGACTG
CAGAACCTGC AGGTGGAACA TGTAGTCGTT CGCAGCGAAC CAATGAGACG CGTTGCTGAA
CTGGCGATGC GCGTCGCGCG GGTTGACGCG ACCGTACTCA TAACAGGACA ATCTGGCGTG
GGCAAAGACG TGATCGCGAG CATGATTCAC GGTCACAGCG CGCGCTCGGC AGGCCCATTC
ATCAAGATCA ATTGCGGCGC TTTACCTCAT GACCTTCTCG AATCCGAACT GTTTGGGTAC
GAACCCGGCG CCTTCACCGG CGCACAGCGT ACCGGCAAAA GCGGCCTGGT CGAGCTGGCC
AACAAAGGCA CGTTGTTTCT GGATGAAATC GGCGATATGC CTCTGGATCT TCAGGTCAAG
CTGCTTCAGA TGCTGCAGGA CCGGACGGTT GTGCGGGTCG GTGGTACGCG CGCGGCTGCG
GTCGACGTAA GAGTTATCGC CGCGACTAAC CGGGACTTGA AGAGCATGGT CGAGGCCCGG
ACATTCCGCG ACGATCTTTA CTATCGCCTC AACGTAATTC CCATTCCGAT TCCGTCGCTT
GCCGACCGCA AGGACGACGT TGCTCCGATG GTGCATCAGT TCGTCGGGGA GTTCAACGAA
CGTTACGGCT GTCATAGAAC GATGTCAGAA CAGACGCTGG CGTTGCTGAT CGCCTATGAC
TGGCCGGGAA ACGTTCGTGA GCTCCGGAAC GTTGTCGAGC GGCTCATTGT GACGTGTGAA
AGCGATGTTA TCGATCCCGA ATTCCTGGAC GGCGTCCTGC CACGGGAAGT GCTGGACGCC
GAACCCAATT CCTTCAGACA ACGAGTCGAG CGGTTCGAAC GCCGCCTCGT TGAAGATGCA
ATGCGTCAGG TTGGAAATAC GAGGGATGCT GCTCGCCTGC TCGGACTGAG CCAGTCAAGC
GTTGTTCGTA AACTTCGCGC CGCGTCATAA
 
Protein sequence
MKENSLADLL ETHPVGMAWQ RAGELVWLNA VARSLLEATD TTVSRACLEA LQEVSNADGR 
GVLVAGAQTY ALSVYRKERE ALLMLVPYGD STRVFPGLDR LQQSALDFEE IFRNSFDGIF
VADGAGMTLM VNEGCERNYD LSAADMIGRH VSEFEKAGWI RPVVAAQVAR TGQRISTTQH
THTGKTILVT GIPLVDAAGT VRKVIINSRD TTELRQLQDA LAQTREKLRK VDEENEALRL
QNLQVEHVVV RSEPMRRVAE LAMRVARVDA TVLITGQSGV GKDVIASMIH GHSARSAGPF
IKINCGALPH DLLESELFGY EPGAFTGAQR TGKSGLVELA NKGTLFLDEI GDMPLDLQVK
LLQMLQDRTV VRVGGTRAAA VDVRVIAATN RDLKSMVEAR TFRDDLYYRL NVIPIPIPSL
ADRKDDVAPM VHQFVGEFNE RYGCHRTMSE QTLALLIAYD WPGNVRELRN VVERLIVTCE
SDVIDPEFLD GVLPREVLDA EPNSFRQRVE RFERRLVEDA MRQVGNTRDA ARLLGLSQSS
VVRKLRAAS