Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_5150 |
Symbol | |
ID | 6279778 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | - |
Start bp | 1314879 |
End bp | 1316528 |
Gene Length | 1650 bp |
Protein Length | 549 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 642616238 |
Product | PAS modulated sigma54 specific transcriptional regulator, Fis family |
Protein accession | YP_001888881 |
Protein GI | 187919850 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.520745 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGGAGA ATTCGCTTGC TGACCTGCTC GAAACTCATC CGGTGGGGAT GGCATGGCAA CGCGCAGGCG AACTGGTATG GCTGAACGCT GTTGCACGTT CGCTTCTCGA AGCGACCGAC ACGACAGTGT CGCGCGCCTG TTTAGAAGCT TTGCAGGAAG TCAGTAACGC TGATGGACGC GGAGTCCTCG TGGCCGGGGC GCAAACTTAC GCGCTCAGCG TGTACCGAAA GGAGCGTGAG GCTTTGCTTA TGCTGGTTCC TTACGGAGAT AGCACGCGAG TCTTCCCCGG CCTGGACCGG CTTCAACAGT CCGCCCTTGA CTTCGAAGAA ATTTTTCGAA ACTCATTCGA CGGCATTTTC GTTGCCGACG GTGCAGGTAT GACACTCATG GTCAACGAAG GCTGCGAGCG CAATTACGAT CTCAGCGCCG CGGACATGAT CGGCCGTCAC GTCTCGGAGT TCGAGAAAGC CGGCTGGATC CGGCCAGTGG TTGCGGCCCA GGTTGCACGA ACCGGCCAGC GGATCTCGAC GACGCAGCAT ACTCACACTG GAAAAACGAT TCTCGTCACT GGCATACCGC TGGTCGACGC GGCAGGCACT GTTCGCAAGG TCATCATCAA TTCCCGCGAC ACGACCGAGC TACGCCAACT GCAGGACGCA CTGGCACAGA CTCGGGAAAA GCTCCGAAAG GTCGACGAAG AAAACGAGGC GCTGCGACTG CAGAACCTGC AGGTGGAACA TGTAGTCGTT CGCAGCGAAC CAATGAGACG CGTTGCTGAA CTGGCGATGC GCGTCGCGCG GGTTGACGCG ACCGTACTCA TAACAGGACA ATCTGGCGTG GGCAAAGACG TGATCGCGAG CATGATTCAC GGTCACAGCG CGCGCTCGGC AGGCCCATTC ATCAAGATCA ATTGCGGCGC TTTACCTCAT GACCTTCTCG AATCCGAACT GTTTGGGTAC GAACCCGGCG CCTTCACCGG CGCACAGCGT ACCGGCAAAA GCGGCCTGGT CGAGCTGGCC AACAAAGGCA CGTTGTTTCT GGATGAAATC GGCGATATGC CTCTGGATCT TCAGGTCAAG CTGCTTCAGA TGCTGCAGGA CCGGACGGTT GTGCGGGTCG GTGGTACGCG CGCGGCTGCG GTCGACGTAA GAGTTATCGC CGCGACTAAC CGGGACTTGA AGAGCATGGT CGAGGCCCGG ACATTCCGCG ACGATCTTTA CTATCGCCTC AACGTAATTC CCATTCCGAT TCCGTCGCTT GCCGACCGCA AGGACGACGT TGCTCCGATG GTGCATCAGT TCGTCGGGGA GTTCAACGAA CGTTACGGCT GTCATAGAAC GATGTCAGAA CAGACGCTGG CGTTGCTGAT CGCCTATGAC TGGCCGGGAA ACGTTCGTGA GCTCCGGAAC GTTGTCGAGC GGCTCATTGT GACGTGTGAA AGCGATGTTA TCGATCCCGA ATTCCTGGAC GGCGTCCTGC CACGGGAAGT GCTGGACGCC GAACCCAATT CCTTCAGACA ACGAGTCGAG CGGTTCGAAC GCCGCCTCGT TGAAGATGCA ATGCGTCAGG TTGGAAATAC GAGGGATGCT GCTCGCCTGC TCGGACTGAG CCAGTCAAGC GTTGTTCGTA AACTTCGCGC CGCGTCATAA
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Protein sequence | MKENSLADLL ETHPVGMAWQ RAGELVWLNA VARSLLEATD TTVSRACLEA LQEVSNADGR GVLVAGAQTY ALSVYRKERE ALLMLVPYGD STRVFPGLDR LQQSALDFEE IFRNSFDGIF VADGAGMTLM VNEGCERNYD LSAADMIGRH VSEFEKAGWI RPVVAAQVAR TGQRISTTQH THTGKTILVT GIPLVDAAGT VRKVIINSRD TTELRQLQDA LAQTREKLRK VDEENEALRL QNLQVEHVVV RSEPMRRVAE LAMRVARVDA TVLITGQSGV GKDVIASMIH GHSARSAGPF IKINCGALPH DLLESELFGY EPGAFTGAQR TGKSGLVELA NKGTLFLDEI GDMPLDLQVK LLQMLQDRTV VRVGGTRAAA VDVRVIAATN RDLKSMVEAR TFRDDLYYRL NVIPIPIPSL ADRKDDVAPM VHQFVGEFNE RYGCHRTMSE QTLALLIAYD WPGNVRELRN VVERLIVTCE SDVIDPEFLD GVLPREVLDA EPNSFRQRVE RFERRLVEDA MRQVGNTRDA ARLLGLSQSS VVRKLRAAS
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