| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5084 |
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| Symbol | |
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| ID | 6280166 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 1247811 |
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| End bp | 1249322 |
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| Gene Length | 1512 bp |
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| Protein Length | 503 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642616174 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001888817 |
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| Protein GI | 187919786 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.494089 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.0445442 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTTCGT CACTACCGCC TTTTGTGCGG CGATCCATTT CGTCATCCGC GTCGCGGGTA
TTGTCGCCAT CTGGCGTGAT TGTTTGTGGC GTTCTGCTGA TACTGTTCAC GTGCAGTCTT
TGCGCGTGGG TGCTTTTCGA GTCGCGTAAA GATGCCTACA ACCGCGCTGA GGAAAACGCG
CGGAACCTGA TGCTGGTTAT CGAGCGGGAC ATCGCTCGCA ACATCGAGCT CTACGATCTG
TCGCTGCAGG CGGTAGTGGA AGGGGTTGCG GATCCGCAGA TGATGGCGCT CCCCGCGAAG
ATCCGCAACG GGGTGCTGTT CGACCGCGCC GCTTCAGGCA AGTACCTTGG CTCCATCTTC
GTGATGAATG AGCGTGGGGA TATCGTTCTG GACTCCGGAT TCTTACCGGC GCGAGCGGGC
AGTTTCGGCG ATCGTGACTA CTTCCGCTTT CATCGCGATA ACGGCAACAC TGGCCTCTAC
ATCAGCAAGC CCTACGAGTC ACGACTGCGG GACGGGGCGC TCACGATTGC CCTGAGCCGC
CGGATTTCGC ACCCGGACGG CTCTTTCGGC GGTGTCGTGG TCGGCACGCT AAGCATCGAC
TATTTTCGCG CTTTGCTGGA CGGCTTGTCC GTGGGGGAGC ACGGCACCGC GGCAGTGATC
GAGACTAACG GCGCCATGAT CACGCGCTTA CCCTACGATC CGCACGTGGT CGGACGCGAC
ATCCAGAACG CTCCGGTTTT TATTCAGGCA ATGTCGACGA AGGAAGGTGC CTTCATGGGC
ACCGCCTCGA TCGATGGGAT CCGCAGGCTC TACGTGTACA AGCACTTGCA CGGGCTTCCG
ATCATCGTCG ACGTGGCGCC TGCGGAAAGC GACGTTTACG CTGAATGGCG ACGCCGGGCC
CTGCGGCTCG AGATCGTGAT GGCGGTGTTC AGCATAATTC TCGGGGCGGG ATCTTTGCTG
TTGTCGCGCG AACTGCGGCG GCGGCAGCGT GCGGAATCGA AACTGCAGCA CCTGGCGCGT
ACGGACGCGC TCACGGGGTT GAGCAATCGC GGCACCTTCG ACGATACGCT GCAAAAGGAG
TGGCAACGAG CCAACCGCTC GGGCCGTCCG CTCTCGTTGC TGTTCATCGA CATTGATCAG
TTCAAGGCTT ACAACGACTA CTATGGTCAC CAGGCGGGCG ACGAGGTGCT GCGAGCCGTT
GCCCAGTGTG TGGGCCTGTG CGTTCTACGA TCGGCGGACC AGGTGGCCCG ATACGGCGGT
GAGGAGTTCG TGGTGACTCT TCCTGATACA GACGCAACCG GCGCTACAAA TGTCGCCGAA
ACCGTTCGGC GCGCCGTATT CGATCTGAAT CTCGAGCACG TCCAAAGCCG GTATGGCCGG
GTGACTGTGA GTATCGGCCT GGTGACCTCC GACGAGCGCG TCGCTCGTGA TGGCGCAACG
CTGGTGAACA TGGCCGACTC GGCGCTATAT GAAGCGAAAT CAACCGGACG TAACCGGGTC
TGCGAGGCGT AG
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| Protein sequence | MRSSLPPFVR RSISSSASRV LSPSGVIVCG VLLILFTCSL CAWVLFESRK DAYNRAEENA
RNLMLVIERD IARNIELYDL SLQAVVEGVA DPQMMALPAK IRNGVLFDRA ASGKYLGSIF
VMNERGDIVL DSGFLPARAG SFGDRDYFRF HRDNGNTGLY ISKPYESRLR DGALTIALSR
RISHPDGSFG GVVVGTLSID YFRALLDGLS VGEHGTAAVI ETNGAMITRL PYDPHVVGRD
IQNAPVFIQA MSTKEGAFMG TASIDGIRRL YVYKHLHGLP IIVDVAPAES DVYAEWRRRA
LRLEIVMAVF SIILGAGSLL LSRELRRRQR AESKLQHLAR TDALTGLSNR GTFDDTLQKE
WQRANRSGRP LSLLFIDIDQ FKAYNDYYGH QAGDEVLRAV AQCVGLCVLR SADQVARYGG
EEFVVTLPDT DATGATNVAE TVRRAVFDLN LEHVQSRYGR VTVSIGLVTS DERVARDGAT
LVNMADSALY EAKSTGRNRV CEA
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