| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5076 |
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| Symbol | |
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| ID | 6278061 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 1238159 |
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| End bp | 1239109 |
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| Gene Length | 951 bp |
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| Protein Length | 316 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 642616167 |
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| Product | choline ABC transporter, periplasmic binding protein |
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| Protein accession | YP_001888810 |
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| Protein GI | 187919779 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
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| TIGRFAM ID | [TIGR03414] choline ABC transporter, periplasmic binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.246095 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.00294016 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAAGC TCTTCAAACA GGCGGTAACC GGCGTAGCGC TACTGTGCGC GGCAGCCACT
TTCGCGTCGG CCGCCGAGCC GCAGTCATGC ACGCAGGTCA ACATGGCGGG GCCGGGATGG
ACCGACATCG ACGCGACCAA TGCAATGACC GGAGTACTGT TGAAGGCGCT CGGCTATAAG
CAGAATGTCG CGAACCTGTC GGTGCCGATC ACTTATCAAG GCCTGAAGAA AGGACAGATC
GACGTGTTCC TCGGCAACTG GATGCCCGCG CAGGCCCCGG TCGTCAAACC GTTCGAAGAA
GAAAAGTCGA TCGAAGTCGT GCATCCGAAT CTGAGCAACG CCAAGTTCAC GCTGGCCGTG
CCCGACTATG TGGCCGCCGC CGGCATTCAT TCTTTCGACG ACCTGGCGAA GAATGCCGAC
AAGTTCGATA GCAAGATTTA CGGCATCGAA CCTGGCGCGC CGGCCAATCA GAACATCAAG
AAAATGGTCG ATGACAAGGC GTTCGGCCTC GGCAACTGGA AGCTCGTCGA ATCGAGCGAG
ACAGGCATGC TCACGCAAGT GGAACGCGCG GTGCGCGACA AGAAGTGGAT TGTCTTTCTT
GCGTGGGAGC CGCATTTGAT GAACACGAAG TTCAAGCTCA CCTATCTCGA TGGCGGCGAC
AAGTACTTCG GGCCCAACTA CGGCGGCGCC ACGGTCAATA CGGTGGCGCG CAGCGGCTAT
GCCGCGCAGT GCCCGAATGT CGGGCGTCTG TTTAAGCAAC TCACTTTCAA CGTCGATCTG
GAGAATGGCG TGATTACCGA AGTACTCGAA AAGAAAACCG GCGTGGATGT CGCCGCCGCG
GAAGCGCTCA AGCGTCACCC CGAATTGTTG AAGTCGTGGC TCGACGGCGT GAATACCGCG
AGCGGCGCCA ATGGCCTGCA AGCCGTGCAA ACCGCGCTCG GCGTGAAATA A
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| Protein sequence | MKKLFKQAVT GVALLCAAAT FASAAEPQSC TQVNMAGPGW TDIDATNAMT GVLLKALGYK
QNVANLSVPI TYQGLKKGQI DVFLGNWMPA QAPVVKPFEE EKSIEVVHPN LSNAKFTLAV
PDYVAAAGIH SFDDLAKNAD KFDSKIYGIE PGAPANQNIK KMVDDKAFGL GNWKLVESSE
TGMLTQVERA VRDKKWIVFL AWEPHLMNTK FKLTYLDGGD KYFGPNYGGA TVNTVARSGY
AAQCPNVGRL FKQLTFNVDL ENGVITEVLE KKTGVDVAAA EALKRHPELL KSWLDGVNTA
SGANGLQAVQ TALGVK
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