Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_5072 |
Symbol | |
ID | 6278655 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | + |
Start bp | 1233523 |
End bp | 1234380 |
Gene Length | 858 bp |
Protein Length | 285 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642616163 |
Product | Substrate-binding region of ABC-type glycine betaine transport system |
Protein accession | YP_001888806 |
Protein GI | 187919775 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.833906 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.0046123 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGACTGA TCAAAAAGAT ATTCGTGTTG AGCGCCTTGG GCGCGGCGCT GGCGGCAAGC AGCGTGAGCG TGTCGGCCGA TAGCAAGCCG ACCATCAAGA TCGGCTACGT GGAAGGCTGG GACGATAGCG TCGCGACCTC GAACGTGGCC GCGCGCGTGA TCGAAAAGCG CCTCGGCTAT CAGGTCACAC TCGTGCCGGT CGCGGCCGGC GTGATGTGGC AGGGCGTGGC GCGCGGCGAC CTCGACGCGA CGCTGTCGGC GTGGCTGCCC GTCACGCACG GTGCGTACTG GAACAACTTC AAGGATAAGG TGGTCGACCT CGGGCCGAAC TTCAACGATG CGAAGATCGG GCTGATCGTG CCGGAGAATG TCGACGTGAA GAGCCTCGGC GATCTGGAAG CGAAGAAGGC GGAGTTCGGC TCGCGCATCG TCGGTATCGA CGCCGGCGCG GGCGTGATGC AGAAAACCAG CGAGGCGATC AAGGCCTATG GGCTCGACTA TCAGTTGATG CCGAGTTCAG GCAGCGCGAT GACTGCTGAG CTGGCGCGTT CGGAGGCGGC GAGCAAGCCG ATTATCGTGA CCGGTTGGAA GCCGCACTGG ATGTTCGCGA AGTACAAGCT GAAATTCCTC GACGATCCGA AGAAGGTATT CGGCGAAGCG GAGCACGTGG ACAGCGTCGT GAATCCTGAA CTCGAGAAGA AGGCGCCGCC GGTCGTCGCG TTCCTCAAGA AGTTCCAATG GAAGCCGGGC GAGATCGACA GCGTGATGCT GGCGACGCAG AACGGCGAGA AGCCGACCGC CGCGGCCGAT GCGTGGATCA GTGCGCATGG TGACCGGGTG GATAGCTGGG TGAAGTGA
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Protein sequence | MRLIKKIFVL SALGAALAAS SVSVSADSKP TIKIGYVEGW DDSVATSNVA ARVIEKRLGY QVTLVPVAAG VMWQGVARGD LDATLSAWLP VTHGAYWNNF KDKVVDLGPN FNDAKIGLIV PENVDVKSLG DLEAKKAEFG SRIVGIDAGA GVMQKTSEAI KAYGLDYQLM PSSGSAMTAE LARSEAASKP IIVTGWKPHW MFAKYKLKFL DDPKKVFGEA EHVDSVVNPE LEKKAPPVVA FLKKFQWKPG EIDSVMLATQ NGEKPTAAAD AWISAHGDRV DSWVK
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