Gene Bphyt_5072 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_5072 
Symbol 
ID6278655 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp1233523 
End bp1234380 
Gene Length858 bp 
Protein Length285 aa 
Translation table11 
GC content62% 
IMG OID642616163 
ProductSubstrate-binding region of ABC-type glycine betaine transport system 
Protein accessionYP_001888806 
Protein GI187919775 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.833906 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.0046123 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGACTGA TCAAAAAGAT ATTCGTGTTG AGCGCCTTGG GCGCGGCGCT GGCGGCAAGC 
AGCGTGAGCG TGTCGGCCGA TAGCAAGCCG ACCATCAAGA TCGGCTACGT GGAAGGCTGG
GACGATAGCG TCGCGACCTC GAACGTGGCC GCGCGCGTGA TCGAAAAGCG CCTCGGCTAT
CAGGTCACAC TCGTGCCGGT CGCGGCCGGC GTGATGTGGC AGGGCGTGGC GCGCGGCGAC
CTCGACGCGA CGCTGTCGGC GTGGCTGCCC GTCACGCACG GTGCGTACTG GAACAACTTC
AAGGATAAGG TGGTCGACCT CGGGCCGAAC TTCAACGATG CGAAGATCGG GCTGATCGTG
CCGGAGAATG TCGACGTGAA GAGCCTCGGC GATCTGGAAG CGAAGAAGGC GGAGTTCGGC
TCGCGCATCG TCGGTATCGA CGCCGGCGCG GGCGTGATGC AGAAAACCAG CGAGGCGATC
AAGGCCTATG GGCTCGACTA TCAGTTGATG CCGAGTTCAG GCAGCGCGAT GACTGCTGAG
CTGGCGCGTT CGGAGGCGGC GAGCAAGCCG ATTATCGTGA CCGGTTGGAA GCCGCACTGG
ATGTTCGCGA AGTACAAGCT GAAATTCCTC GACGATCCGA AGAAGGTATT CGGCGAAGCG
GAGCACGTGG ACAGCGTCGT GAATCCTGAA CTCGAGAAGA AGGCGCCGCC GGTCGTCGCG
TTCCTCAAGA AGTTCCAATG GAAGCCGGGC GAGATCGACA GCGTGATGCT GGCGACGCAG
AACGGCGAGA AGCCGACCGC CGCGGCCGAT GCGTGGATCA GTGCGCATGG TGACCGGGTG
GATAGCTGGG TGAAGTGA
 
Protein sequence
MRLIKKIFVL SALGAALAAS SVSVSADSKP TIKIGYVEGW DDSVATSNVA ARVIEKRLGY 
QVTLVPVAAG VMWQGVARGD LDATLSAWLP VTHGAYWNNF KDKVVDLGPN FNDAKIGLIV
PENVDVKSLG DLEAKKAEFG SRIVGIDAGA GVMQKTSEAI KAYGLDYQLM PSSGSAMTAE
LARSEAASKP IIVTGWKPHW MFAKYKLKFL DDPKKVFGEA EHVDSVVNPE LEKKAPPVVA
FLKKFQWKPG EIDSVMLATQ NGEKPTAAAD AWISAHGDRV DSWVK