| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5061 |
|---|
| Symbol | |
|---|
| ID | 6278048 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 1219105 |
|---|
| End bp | 1220304 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642616152 |
|---|
| Product | formaldehyde dehydrogenase, glutathione-independent |
|---|
| Protein accession | YP_001888795 |
|---|
| Protein GI | 187919764 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
|---|
| TIGRFAM ID | [TIGR02819] formaldehyde dehydrogenase, glutathione-independent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0129321 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGCA ATCGCGGCGT TGTGTATCTG GGGCAGGGCA AGGTGGAAGT GCAGTCGATC
GACTTTCCGA AGATGGTCGA TCCACGTGGC CGGTCGATCG GTCACGGCGT GATCCTGAAG
GTGGTGAGCA CCAATATTTG CGGCTCGGAT CAGCACATGG TGCGCGGCCG CACGACCGCC
GAAGTCGGCC TCGTGCTCGG CCATGAGATT ACCGGCGAGG TGATCGAGGT GGGCCGGGAC
GTGGAAACGC TGAAGGTCGG CGATCTCGTT TCGGTACCGT TCAACGTGGC CTGCGGACGT
TGTCCGACCT GCAAGGCACA ACATACCGGC GTGTGTCTGA ACGTGAATCC GTCGCGCGCG
GGTGGCGCTT ATGGTTACGT GGACATGGGC GGCTGGATCG GCGGCCAAGC CGAATACGTA
CTGGTGCCGT ACGCCGACTT CAATCTGCTG AAATTCCCCG ACCATGCGCA GGCGATGGCG
AAAATCCGCG ACCTCACGTG TCTGTCCGAC ATTCTGCCGA CCGGCTATCA CGGCGCGGTG
ATGGCAGGCG TGAAGCCCGG CGCTACCGTG TATATCGCGG GCGCGGGTCC GGTGGGCATG
GCGGCTGCCG CTTCGGCGCG CTTGCTGGGC GCGGCCTGTA CGATCGTCGG CGACATGAAC
GAGGAGCGTC TCGCGCATGC GCGCAAGATG GGCTTCCAGA CCATCGATCT GTCGAAGGAT
GCCACGCTCG GCGAGCAGAT CGAGCAGATT CTCGGCAAGC CCGAAGTGGA TTGCGCGGTC
GACTGCGTTG GCTTCGAAGC GCACGGCCAC GGCAGCAGCG GATCTCACGA GGAAGCGCCG
GCCACCGTGC TCAACTCGCT GATGGAAATC ACGCGGGCCG CGGGCGCGAT CGGCATTCCG
GGCCTGTACG TCACGGACGA TCCGGGTGCC GCCGATGCCG CCGCGCGCAA AGGCAGCCTG
AGCATCCGCT TCGGTCTGGG CTGGGCCAAG TCGCACTCTT TCCATACCGG ACAGACGCCG
GTGATGAAAT ACAACCACAA TCTCATGCAG GCGATCTTGT GGGATCGCTT GCCGATTGCG
GATATCGTCA ACGTGACCGT GGTGTCGCTC GACCAGGCGC CCGATGGTTA TCGCCGGTTC
GATGGCGGCG CGCCGAAGAA GTTTGTGATC GATCCGCACG GGTTGTTGAA GGCGGCTTGA
|
|---|
| Protein sequence | MSSNRGVVYL GQGKVEVQSI DFPKMVDPRG RSIGHGVILK VVSTNICGSD QHMVRGRTTA
EVGLVLGHEI TGEVIEVGRD VETLKVGDLV SVPFNVACGR CPTCKAQHTG VCLNVNPSRA
GGAYGYVDMG GWIGGQAEYV LVPYADFNLL KFPDHAQAMA KIRDLTCLSD ILPTGYHGAV
MAGVKPGATV YIAGAGPVGM AAAASARLLG AACTIVGDMN EERLAHARKM GFQTIDLSKD
ATLGEQIEQI LGKPEVDCAV DCVGFEAHGH GSSGSHEEAP ATVLNSLMEI TRAAGAIGIP
GLYVTDDPGA ADAAARKGSL SIRFGLGWAK SHSFHTGQTP VMKYNHNLMQ AILWDRLPIA
DIVNVTVVSL DQAPDGYRRF DGGAPKKFVI DPHGLLKAA
|
|---|
| |