| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5058 |
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| Symbol | |
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| ID | 6280429 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 1215025 |
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| End bp | 1216710 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642616149 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_001888792 |
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| Protein GI | 187919761 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.0575159 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGCGA ACGAATACGA CTACATCATC GTGGGCGCGG GTTCGGCGGG CAACGTGCTC
GCTTCGCGCC TGACCGAAGA CGCGGACGTG ACCGTGCTGC TGCTCGAAGC GGGAGGCCCC
GACTACCGCT TCGATTTCCG CACGCAAATG CCGGCCGCGC TCGCCTTTCC GCTGCAAGGA
CGCCGCTACA ACTGGGCGTA CGAAACGGAC CCCGAGCCGC ATATGAACAA CCGGCGCATG
GAATGCGGGC GCGGCAAGGG GCTCGGCGGA TCGTCACTGA TCAACGGCAT GTGCTATATC
CGCGGCAATG CGCTCGATTA CGACGGCTGG GCCGCGCACG CCGGCCTAGA AAACTGGACC
TATCTGGATT GCCTGCCGTA TTTCCGCAAG GCCGAAACGC GCGATGCCGG GGCGAACGCT
TACCACGGCG GCGACGGTCC GGTGCACGTG ACTACCAGCA AGCCCGGCAA CAATCCGCTC
TTCGCGGCGA TGGTCGAAGC CGGTGTGCAG GCCGGCTTTC CGCGCACCGA CGATCTGAAC
GGCTATCAGC AGGAAGGCTT CGGCCCGATG GATCGCACGG TCACGGCGAA CGGCCGGCGC
GCCAGCACGG CGCGCGGCTA TCTGGATCGT GCGAAGACAC GGCCGAATCT CACCATCGTC
ACGCATGCCG TGACGGATCG CGTGCTGTTC TCGGGCAAGC GCGCGGTCGG CGTCGCGTAT
CTGCATCATG GCAATGCGGT GAATGCGCAG GCGCGCCGCG AGGTGCTGGT GTGCAGCGGC
GCGATTGCGT CGCCGCAGTT GTTGCAGCGC TCGGGCGTGG GCCGCTCCAC ATGGCTGCGC
GAACTCGACG TACCGCTCGT TCACGATCTG CCTGGTGTCG GCGAGAACTT GCAGGACCAT
CTGGAGATGT ACATCCAGTA CGAGTGCAAG GAACCCATTT CGCTTTACCC GGCGTTACAG
TGGTGGAATC AACCGGCTAT CGGACTCGAA TGGATGCTCA AGGGCACGGG CATCGGCGCG
AGTAATCAGT TCGAAGCCGG CGGCTTCATC CGCACACGCG ACGACGATCT GTGGCCGAAC
ATTCAGTATC ACTTCCTGCC GGTCGCGATC AATTACAACG GTTCGAATGC CATCAAGATG
CACGGCTTTC AGGCCCACGT CGGCTCGATG CGCTCGCCGA GCCGCGGCCG CGTGAAGCTC
ACGTCGCGCG ATCCGAACGC GCATCCGAGC ATCCTGTTCA ATTACATGGC CGATCCGCTC
GACTGGCGCG AGTTCCGCGA CGGCATTCGC ATCACGCGCG AGATCATGCG GCAACCGGCG
CTCGACCGGT ATCGCGGCCG CGAACTGAAC CCCGGCGCCG AACTGACCAC CGACGAACAG
CTCGACACGT TCGTGCGCAT GCGGGCGGAG ACGGCGTTTC ATCCGTCGTG CTCGTGCAAG
ATGGGCTATG ACGACATGGC CGTGGTCGAT AACGAGGGGC GCGTGCACGG CATGGAAGCG
CTGCGCGTGG TGGATGCGTC GATCATGCCG CGCATCACGA CTGGCAATCT CAACGCGCCG
ACCATCATGC TGGCCGAAAA GATCGCCGAC CGGATTCATG GACGCGAACC GCTGGCGCGA
GTGGACACGC CCTACTTCGT GGCGAATGGC GTGGCGTCGA GAAAACAGGA GAGCGCGACG
GTTTGA
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| Protein sequence | MAANEYDYII VGAGSAGNVL ASRLTEDADV TVLLLEAGGP DYRFDFRTQM PAALAFPLQG
RRYNWAYETD PEPHMNNRRM ECGRGKGLGG SSLINGMCYI RGNALDYDGW AAHAGLENWT
YLDCLPYFRK AETRDAGANA YHGGDGPVHV TTSKPGNNPL FAAMVEAGVQ AGFPRTDDLN
GYQQEGFGPM DRTVTANGRR ASTARGYLDR AKTRPNLTIV THAVTDRVLF SGKRAVGVAY
LHHGNAVNAQ ARREVLVCSG AIASPQLLQR SGVGRSTWLR ELDVPLVHDL PGVGENLQDH
LEMYIQYECK EPISLYPALQ WWNQPAIGLE WMLKGTGIGA SNQFEAGGFI RTRDDDLWPN
IQYHFLPVAI NYNGSNAIKM HGFQAHVGSM RSPSRGRVKL TSRDPNAHPS ILFNYMADPL
DWREFRDGIR ITREIMRQPA LDRYRGRELN PGAELTTDEQ LDTFVRMRAE TAFHPSCSCK
MGYDDMAVVD NEGRVHGMEA LRVVDASIMP RITTGNLNAP TIMLAEKIAD RIHGREPLAR
VDTPYFVANG VASRKQESAT V
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