Gene Bphyt_5053 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_5053 
Symbol 
ID6278147 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp1210793 
End bp1212211 
Gene Length1419 bp 
Protein Length472 aa 
Translation table11 
GC content63% 
IMG OID642616144 
Productmajor facilitator superfamily MFS_1 
Protein accessionYP_001888787 
Protein GI187919756 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.122247 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCACCG CCTATCCGCC GCGCGCGAGC GCAGCCGCCC GACTCGAACG GCTGCCATTC 
TCCGGTTATC ACCGGACCAT TTTCATCATC ATTGCCATCG CGTTCTTTTT CGATTCCGTC
GATCTGGGCA CGATGACTTT CGTGCTCGGT TCGATCAAGA CGGAATTCGG CTTATCGACC
GCGACGGCGG GGTTGGTGGC CAGCGCGAGT TTCTTCGGCA TGGTGATCGG CGCGGCAATT
GCCGGCTTGC TGGCGGATCG CTTCGGCCGC CGGCCTGTCT TTCAGTGGAG CATGGTGTTG
TGGGGGCTCG CGTCGTATCT GTGCTCGACG GCGCAGAGCG TGGAAGCGTT GATCTTTTAT
CGCGTGCTGC TCGGCTTCGG CATGGGCATG GAATTTCCGA TTGCGCAGAC GTTGTTGTCG
GAGTTCGTGC CGGCTGCGTC GCGCGGCCGT CTGATCGCGC TGATGGACGG CTTCTGGCCG
CTCGGCTTCA TTACTGCGGG CGTGGTGTCG TACTTCGTCT TGCCGACCTT CGGCTGGCGC
ACCGAGTTTG CGCTGCTCGC GATTCCCGCT GTATTCGTGT TGATCGTGCG CCGCGTCGTG
CCGGAATCGC CGCGTTGGCT GGAACATCGC GGACGTCTCA GTGAAGCGGA CAAGATTCTC
GCCGAGGTCG AAGTGAAGGT GATGAAAGCG GCCGGGCTGA GCCAGTTGCG CGCACCTGTC
GTGCTCGCGG AACCGCCGGC CGCCAAGAGC ACGGGAGCGT TCCGCGAGAT CTGGAGCATG
GCTTACCGGC GGCGCACGAT CATGGTGTGG ACGCTGTGGT TCTTCGCGCT GCTCGGTTTC
TATGGGCTGA CGTCCTGGCT CGGCGCGTTG ATGCAGCAAG CAGGCTTTGC GGTGACGAAG
TCGGTGCTGT ACACGGTGCT GATTTCTCTC GGTGGGATTC CGGGGTTTAT TTGCGCGGCG
TGGCTGGTCG AACGTTGGGG CCGTAAACCG ACTTGCATCG CGTCGCTCGC GGGCAGTGCG
GTGATGGCTT ACGTATATGG ACAAACCGCG CTGCATGCTC AGACGCCGAC CTTGTTGATC
TGTGCCGGGC TGGCCATGCA GTTCTTCCTG TTCGCGATGT GGGCGGTGCT GTACACCTAC
ACGCCGGAGC TATACGGGAC CGGCGCGCGC GCGACGGGTT CGGGCTTCGC GTCGGCGATT
GGCCGCGTGG GTTCGCTGAT CGGACCTTAC GTGGTGGGCG TGGTGTTGCC GATGTTCGGC
CAGGGCGGCG TGTTCTCGCT CGGCGCGATG TGTTTTGTGA TCGCAGCGGC GGCGGTGTGG
ATCTTGGGCA TCGAGACGCG CGGGTTGGCG CTCGAGACGC TGGTGTCGGA GGCGGTTGAG
ACGGATGCGC GAGGGGTGTT GAGTCCGGCG CGGGAGTGA
 
Protein sequence
MSTAYPPRAS AAARLERLPF SGYHRTIFII IAIAFFFDSV DLGTMTFVLG SIKTEFGLST 
ATAGLVASAS FFGMVIGAAI AGLLADRFGR RPVFQWSMVL WGLASYLCST AQSVEALIFY
RVLLGFGMGM EFPIAQTLLS EFVPAASRGR LIALMDGFWP LGFITAGVVS YFVLPTFGWR
TEFALLAIPA VFVLIVRRVV PESPRWLEHR GRLSEADKIL AEVEVKVMKA AGLSQLRAPV
VLAEPPAAKS TGAFREIWSM AYRRRTIMVW TLWFFALLGF YGLTSWLGAL MQQAGFAVTK
SVLYTVLISL GGIPGFICAA WLVERWGRKP TCIASLAGSA VMAYVYGQTA LHAQTPTLLI
CAGLAMQFFL FAMWAVLYTY TPELYGTGAR ATGSGFASAI GRVGSLIGPY VVGVVLPMFG
QGGVFSLGAM CFVIAAAAVW ILGIETRGLA LETLVSEAVE TDARGVLSPA RE