| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5050 |
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| Symbol | |
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| ID | 6280045 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 1206681 |
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| End bp | 1209683 |
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| Gene Length | 3003 bp |
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| Protein Length | 1000 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642616141 |
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| Product | sarcosine oxidase, alpha subunit family |
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| Protein accession | YP_001888784 |
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| Protein GI | 187919753 |
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| COG category | [E] Amino acid transport and metabolism
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase)
[COG0492] Thioredoxin reductase |
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| TIGRFAM ID | [TIGR01372] sarcosine oxidase, alpha subunit family, heterotetrameric form |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.125712 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.268825 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAGA AAGACCGACT CCCCAACGGC GGCCGCATCA ATCGCGCAAT GCCGCTGACC
TTCACCTTCA ACGGCCGCCA GTACCAGGGC TATCAGGGCG ACACGCTGGC TTCGGCGCTG
CTCGCGAACG GCGAGCATTT CGTCGCGCGC AGCTGGAAAT ATCACCGGCC GCGCGGCATC
GTGACAGCGG GTGTGGAAGA GCCGAATGCC GTCGTGCAAC TCGAAACCGG TGCGTACACG
GTGCCGAATG CGCGCGCGAC CGAAGTCGAG TTGTATCAGG GGCTCGTCGC CACCAGCGTG
AACGCGAAGC CGAGCATCGA GAAAGACCGC ATGGCGGTCA ACCAGAAGTT CGCCCGCTTC
ATTCCGGCGG GCTTCTACTA CAAGACCTTC ATGTGGCCGC GCAAATTCTG GCCGAAGTAT
GAAGAAGTGA TCCGCGACGC GGCCGGCCTC GGCAAGGCGC CGGAACATAC TGACGCGGAC
CGTTATGACA AGTGCTTTGC GCATTGCGAC GTGCTGGTGG TGGGCGGTGG CCCGACCGGC
CTCGCGGCGG CGCATGCCGC CGCGTTGTCC GGCGCGCGCG TGACGCTGGT CGACGATCAG
CCGGAACTCG GCGGCTCGCT GCTGTCGTGC CGCGCGGAGA TCGACGGCAA GCCCGCGCTC
CACTGGGTGC AGAAGATCGA GGACGAACTG CGGCAGATGC CCGAAGTGAA GATCCTGTGC
CGCAGCACGG CATTCGGCTA TCAGGACCAC AATCTCGTGA CGTTAACGCA GCGGCTCACC
GAACATCTGC CGGTGTCGCA ACGCAAGGGC ACGCGCGAAC TGATGTGGAA GATCCGCGCG
AAACGCGTGA TTCTCGCGAC CGGCGCGCAC GAGCGTCCCA TCGTGTTCGG CAATAACGAT
CTGCCGGGCG TGATGCTGGC GTCGGCCGTG TCGACCTATC TGCATCGCTA TGCGGTGCTG
CCGGGCCGCA ACGCGGTGGT GTTCACCAAT AACGACGACG GTTATCAATG CGCGCTCGAT
CTGAAAGCAG CCGGCGCTCA GGTGACGGTG GTCGATCCGC GCGCGAGCGA ATCGAAAGGC
ACGCTGCCCG CTCTGGCACG CCGCTACGGC GTCAAGGTGT TGAACGGTGT CGTGATCACG
GCGGCGCACG GCAAACTGCG CGTGGCGTCC GTGGATCTCG CGCCGTATTC GAACGGACAG
GTCGGTGCGA AGCAGAGCGA GCTTGCCTGC GATCTGCTCG CGATGTCCGG CGGTTGGAGC
CCGGTGTTGC ATCTGTTCGC GCAATCGGGC GGCAAGGCGC ACTGGCATGA CGAGAAGGCG
TGCTTCGTGC CGGGCAAGGC GATGCAGCCG GAAACCAGCG TCGGCGCATG CGCGGGCGAC
TTCAAGCTCG GCCAGGGCAT CCGTTTCGCG ATGGACGCGG GCGCCGAAGC CGCGCGCGCG
GCCGGTCATA TCGTGGCTCG GCCCAATCCG GTTCAGGTCG CCGAGATCAC GGAAGCGAAG
ATGCTGCCGC TGTGGCTGGT CGGCGGCCGC GAGATGGCTA CGCGCGGGCC GAAGCAGTTC
ATCGATTTCC AGAACGACGT GTCGGCCGCG GATATTTTCC TCGCGGCACG CGAGGGCTTC
GAATCGGTCG AGCACGTAAA GCGCTATACG GCAATGGGTT TCGGCACCGA CCAGGGCAAG
CTCGGCAACA TCAATGGCAT GGCGATTCTC GCGCAGGCGC TCGGCAAGAC GATTCCGGAG
ACCGGCACCA CGACCTTCCG TCCGAACTAC ACGCCCGTCA CCTTCGGCAC GTTCGCCGGC
CGCGAGCTGG GCGAGTTTCT CGATCCGGTG CGCAAGACGG CGGTACACGA GTGGCATGTG
GAAAACGGCG CGGCTTTCGA GGACGTCGGC AACTGGAAGC GTCCGTGGTA CTACCCGAAA
GCGGGCGAAG ACTTGCACGC GGCGGTGGCG CGCGAATCGC TCGCGGTGCG CACGAGCGTC
GGCATTCTCG ATGCTTCCAC GCTCGGCAAG ATCGACATTC AGGGCCCCGA TTCGGCGAAG
CTCCTGAACT GGGTCTACAC GAATCCGTGG AGCAAGCTGG AAGTCGGCAA GTGCCGCTAC
GGTCTCATGC TCGACGAAAA CGGCATGATC TTCGACGACG GCGTGACCGT GCGCCTCGCC
GATCAGCACT ACATGATGAC GACCACCACC GGCGGCGCGG CGCGCGTGCT GACGTGGCTC
GAACGCTGGC TGCAAACCGA ATGGCCAGAT ATGCGCGTGC GGCTCGCGTC GGTGACGGAT
CATTGGGCGA CTTTTGCCGT GGTCGGTCCG AACAGCCGCA AGGTGCTGCA GAAGGTCTGC
CAGGACATCG ACTTCGCGAA CGCGGCGTTC CCGTTCATGA GCTATCGCGA AGGCACGGTG
GCGGGCGCGG CCTCACGGGT GATGCGCATC AGCTTCTCGG GCGAACTGGC TTATGAAGTG
AACGTGCCGG CGAACGTTGG ACGCGCGGTG TGGGAAGCGC TGATGGCCGC GGGTGCCGAG
TTCGACATCA CGCCGTACGG CACCGAAACC ATGCACGTGC TGCGCGCGGA GAAGGGCTAC
ATCATCGTCG GCCAGGATAC GGACGGCTCG ATGACGCCGT ACGACCTCGG CATGGGCGGG
CTCGTCGCGA AGTCGAAGGA CTTTCTCGGC AAGCGTTCGC TGACGCGCTC GGACACCGCG
AAGGCCGGGC GTAAGCAACT GGTCGGCCTG CTCTCGGACG ATCCGTCGTT CGTGATACCG
GAAGGCTCGC AGATCGTCGC GGGTCCGTTC CAGGGCGAGA CGGCGGCGAT GCTCGGCCAC
GTCACGTCGA GCTACTACAG CCCGATCCTG AAGCGTTCGA TCGCGATGGC GGTCGTCAAG
GGCGGCCTCG ACAAGATCGG CGAAACGGTC ACGATTCCGC TTTCGAGCGG CAAACAGATT
GCAGCGAAGG TCACCAGTTC GGTGTTCTAC GACAGCGAAG GAGCACGTCA ACATGTGGAA
TGA
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| Protein sequence | MSQKDRLPNG GRINRAMPLT FTFNGRQYQG YQGDTLASAL LANGEHFVAR SWKYHRPRGI
VTAGVEEPNA VVQLETGAYT VPNARATEVE LYQGLVATSV NAKPSIEKDR MAVNQKFARF
IPAGFYYKTF MWPRKFWPKY EEVIRDAAGL GKAPEHTDAD RYDKCFAHCD VLVVGGGPTG
LAAAHAAALS GARVTLVDDQ PELGGSLLSC RAEIDGKPAL HWVQKIEDEL RQMPEVKILC
RSTAFGYQDH NLVTLTQRLT EHLPVSQRKG TRELMWKIRA KRVILATGAH ERPIVFGNND
LPGVMLASAV STYLHRYAVL PGRNAVVFTN NDDGYQCALD LKAAGAQVTV VDPRASESKG
TLPALARRYG VKVLNGVVIT AAHGKLRVAS VDLAPYSNGQ VGAKQSELAC DLLAMSGGWS
PVLHLFAQSG GKAHWHDEKA CFVPGKAMQP ETSVGACAGD FKLGQGIRFA MDAGAEAARA
AGHIVARPNP VQVAEITEAK MLPLWLVGGR EMATRGPKQF IDFQNDVSAA DIFLAAREGF
ESVEHVKRYT AMGFGTDQGK LGNINGMAIL AQALGKTIPE TGTTTFRPNY TPVTFGTFAG
RELGEFLDPV RKTAVHEWHV ENGAAFEDVG NWKRPWYYPK AGEDLHAAVA RESLAVRTSV
GILDASTLGK IDIQGPDSAK LLNWVYTNPW SKLEVGKCRY GLMLDENGMI FDDGVTVRLA
DQHYMMTTTT GGAARVLTWL ERWLQTEWPD MRVRLASVTD HWATFAVVGP NSRKVLQKVC
QDIDFANAAF PFMSYREGTV AGAASRVMRI SFSGELAYEV NVPANVGRAV WEALMAAGAE
FDITPYGTET MHVLRAEKGY IIVGQDTDGS MTPYDLGMGG LVAKSKDFLG KRSLTRSDTA
KAGRKQLVGL LSDDPSFVIP EGSQIVAGPF QGETAAMLGH VTSSYYSPIL KRSIAMAVVK
GGLDKIGETV TIPLSSGKQI AAKVTSSVFY DSEGARQHVE
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