Gene Bphyt_5046 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_5046 
Symbol 
ID6280058 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp1202184 
End bp1203266 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content63% 
IMG OID642616137 
Producttranscriptional regulator, AraC family 
Protein accessionYP_001888780 
Protein GI187919749 
COG category[K] Transcription 
COG ID[COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.311453 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATTCCG CTGAACCGCT TCCCCCTCAA TCGATCGACG GCACTTCGAA GCAGCGCATC 
CGCTTCGGCA TCATCCTGTT GCCGAACTTC ACGCTGACGG CGTTTTCGGG TTTCGTCGAC
CTGCTGCGCC TGTCCGCCGA TGAAGGCGAT TTCAGCAAGC CCGTGCGCTG TTCATGGAGC
GTGATAGGGG AAACCCTTGC TCCGGTGCGG GCGAGTTGCG GCATCCAGAT CACGCCGTGG
GAGACGTTCG ATACCGCCGA GCCGTTCGAT TACGTCGTGG TGGTCGGCGG CTTGCTGCAT
TCCGGGCCGG CCGCGAACGA TGCCACGCTC GCTTTCATCC GGCGGGCCGC CGCCACCGAT
GCGACGCTCG TCGGCATGTG CACGGGCGTG TTTTCGCTGA TGCGCGCCGG CGTGCTCGAC
GGTTACCGCA TTTGCGTGAG CTGGTTTCAC TACTGGGATT TCATCGAGCG TTTTCCGTCG
GTGAACGAGG AAGCGCTGAT CGCCGACCGG CTGTTCGTGA TCGACCGGCG GCGCATTACG
TGTTCCGGCG GGCGCGCGTC GATCGACGTG GCCGCCGCGA TCCTGTTGCG TCACTTCGAA
ACCGCCACGG TGCAGAAGGC GCTGCGCATT CTGCTCGTCG ACGACATGCA GAAAGGCAAC
GCACCGCAAC CGCATCCGCC GGGGCTCGCG CCCGCCACGC ATCCGAAGGT CAAGCGCGCG
ATTCTGCTGA TGGAGCAGCA TGTGGGGCGC TCGCTGTCGC TCGATGAACT TGCGGGGAAA
CTCGATCTTT CGCCGCGTCA GTTGGAACGG CTTTTCAAGG CGGAAACGGG TAAGGCGCCG
CAGGCCTACG CGAAGCAGGT GCGGTTGCGG ACAGCCGCGT GGTTGTTGAC AAGTTCGGAT
AAGACGGTGG CGGATATTGC TTCGAGTTGC GGGTTTTCCG ATGCTTCGCA CCTGGGGCGG
GAATTCCGCA AGCAATTCGG TTTGCCGCCG ATGATGTATC GCGAGCAGCG CGGCACGGCG
GCGGAAGCTG AGGATAGTGG GGATTATGAT GAGACGTTTC CGGGGCGGGC GCAGGCGATT
TGA
 
Protein sequence
MNSAEPLPPQ SIDGTSKQRI RFGIILLPNF TLTAFSGFVD LLRLSADEGD FSKPVRCSWS 
VIGETLAPVR ASCGIQITPW ETFDTAEPFD YVVVVGGLLH SGPAANDATL AFIRRAAATD
ATLVGMCTGV FSLMRAGVLD GYRICVSWFH YWDFIERFPS VNEEALIADR LFVIDRRRIT
CSGGRASIDV AAAILLRHFE TATVQKALRI LLVDDMQKGN APQPHPPGLA PATHPKVKRA
ILLMEQHVGR SLSLDELAGK LDLSPRQLER LFKAETGKAP QAYAKQVRLR TAAWLLTSSD
KTVADIASSC GFSDASHLGR EFRKQFGLPP MMYREQRGTA AEAEDSGDYD ETFPGRAQAI