| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5044 |
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| Symbol | |
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| ID | 6279770 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 1198623 |
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| End bp | 1201085 |
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| Gene Length | 2463 bp |
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| Protein Length | 820 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 642616135 |
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| Product | YD repeat protein |
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| Protein accession | YP_001888778 |
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| Protein GI | 187919747 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.928216 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.520262 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAAGAA ACGGAATTAA CGAGAGTTCG GCGGGAATGG CGGCCCGCTT GCTGGCCGCG
TTCATCCTGC TAATGGTGGC GTTCGGGGCG AACGCCGCTG ATTGTAATGC GGTGTGGGCA
GCCACTGGCG CGAAGCCAGG TTCACCCACT TGCCGGTGGG ATGCTTACGC CGGTGTACCT
GGCGGCATAC AGTACTACAA CTGCGTGAGT TTGCCGCTGA TCGACGCGTG GTGCGCGACA
CCGGCGGATG ATCAGCCTGA GGCCAGTTGT CCGGTTGCTG ACCCGGTGTA TCCCGGCAGC
GGAGCAGTCA CGTTGACGGA GGCCGATTTT GTCAGCGGTG ACGAGATTCC GATGCTTTTC
GCGCGGACGT ATCGTTCAAA GCCGCTGACA GCATCGGCGA CGGCGATGGG GCCGGTCTGG
TTCCATAGCT GGCAGCGTAA CCTCGGACTA GCGAATGCCA ATAACGGCAG CACGTCAACG
GTGCTGGCCT ATCGGCAGAG TGGTGAGCCC ATTACCTTCG TCTGGTCGGC TGGTACCTGG
CGCACCAAGG CCTTCACTGG ATTAGCGCTG GCGCAGAACG ATTCTGGATG GACACTCACC
GACCTCAGCA CAGAGACCGT TGAATCGTAC TCCGGCCAAG GCGTGCTGCT GGCTGAACGC
ACGAAGACAG GTTTTGTTCG CACGCTGAGC TATGACGGTT CCGGTCTGCT GACCACTGTT
ACGCAGCATG CCGAAGGCAC GGACACCAAC AAGGACGTCA CGCTTCGGCT TGACTACGAC
GACAAGCGTC GTCTGTCGCG TCTCAATGAT CCACTGGGCG GTCTGACCCA GTACGGATAC
GACGCGAATG GCAATCTTGT TTCGGTCACG TGGCCGGATG GAAACGTGCG CCGCTACGTC
TACGACGACA CGCGGTTCAG GAACGCATTG ACCGGAGAGA TCGACGAGTC GGGCAATCGC
ATGGCGACGT GGAGCTACGA CGCTCAAGGT CGTGCGGTGG AGGTGAGTCA TCCGAATGCT
GGACAGAACG TGCAGTTGGC CTACAACGCG GGCTCGACGA TTATTACCGC TAGCAAAGGT
TCCACCACGC TGAGTCTGTC GTCGATCGGC GGCATGCTCC GGCCGACCGG GAGCGCCTCG
ACCGCGGGCA ATACGAACTC GGGGTGGGAT GCGTCAGGCA ATTTGCTGAA AGACACTGAC
GCGAGCGGTG GCACGTCTGA ATACAGCTAC GACGATACCG GGCGCCCGGT TCGGGCGACG
GTAAAGAGTG CGGGCGGCAC ATCAATCACG ACGATCCGTT ACTACGAGGC CAGTGGCCTG
CGTCCGTCGA TGATCGCATC TCCAAGGTTG ATCCAGTCTT TCGTGTACGA CGCGAACGGC
AATGTCACAG GGATAAGTGA GACGCCGACT ACGGACGCGA CGGGCGCCAG CGCTTTCGAT
GCCGCGAAGG CGGATGGGGT GACTACCGCG TACGGCATGA CCTACGACGC CAACAACCGG
CTTGCTTTTG TGATGCAACT AGCGGACGGA AAGTCCGCGG CTCAGTGGAA GGTCAATCGT
GACTTAACGG GCAATGTGTT CGCCATTATC GCGCTAGGAG ACATTCCACA AGCGACCGAG
TTCATCTCGC GCGACGCGGC ACATCGTGTC CAGTACGGCT ATAACCCAAC GGGCGATTTT
TATCTCCGTT ATGACCGGCG CGGACGCATC GACAACTTCA AGTTCAATGA ATATGCGAGT
CCGGCGAACG GCGGAATTCG ACGCGTGTTC AAGGCGAGGT TCGGCTACTC GCCAGACGGA
CGGGTGGTAT CGCGCACAGG TACGGTTGCG AACGACGGCA GCGTTCTTGA CCTGAACGAT
GGCACGGACA TTCCGATCTC CGGCGACGAA ACCAATCAGT GGATCGATAA CTATAACTAT
GGTGACTCGC CGGTGGGGCC GCCTGCGAAC CTTCAGGGCG CGCGTCGACT GCTGGGGGAT
AACTTCCTGG GCACGTCAAC CGTTTGCAGC GGCTGTCATT TTTCGGCCGG GCTGATCGAC
GGCACGGTCC GCGGTATCGC GATGGTCTAT CGGCTGTTGC AGAACCCGGT GGTGCGCTAT
GGCATCGGCC AGGGCGCCAG AAAAGCTGCC GAGAACTGGG ATCGCATCAA GCAGATGTGC
AAGCCCGCTG CGGAGACGGA GGTGGATGGG ATCCCGCCGG GGCGGATCAC TTCGGAATAT
ACGGATATCA CAACCGGCAA TAGTATGCGG AACATTCGTA CTGATGTAGG CAAGGCGGAG
TTCGAAGCTA ATCTGGCAGA GAGCGGGTAC GCGCAGACGC TGAGCAAAGA CGGAAAGGCC
GATATCTTTA CCAAAGGTGA AAGTCAGTAT ACTGTCCGCG AATATTCAAA CTCTGGCGCT
ATGACCGCGG ACGTAAAAGT TAGCGGGGTG AATATAGCGA AGATCAGGCT GGGGGGGAAA
TGA
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| Protein sequence | MIRNGINESS AGMAARLLAA FILLMVAFGA NAADCNAVWA ATGAKPGSPT CRWDAYAGVP
GGIQYYNCVS LPLIDAWCAT PADDQPEASC PVADPVYPGS GAVTLTEADF VSGDEIPMLF
ARTYRSKPLT ASATAMGPVW FHSWQRNLGL ANANNGSTST VLAYRQSGEP ITFVWSAGTW
RTKAFTGLAL AQNDSGWTLT DLSTETVESY SGQGVLLAER TKTGFVRTLS YDGSGLLTTV
TQHAEGTDTN KDVTLRLDYD DKRRLSRLND PLGGLTQYGY DANGNLVSVT WPDGNVRRYV
YDDTRFRNAL TGEIDESGNR MATWSYDAQG RAVEVSHPNA GQNVQLAYNA GSTIITASKG
STTLSLSSIG GMLRPTGSAS TAGNTNSGWD ASGNLLKDTD ASGGTSEYSY DDTGRPVRAT
VKSAGGTSIT TIRYYEASGL RPSMIASPRL IQSFVYDANG NVTGISETPT TDATGASAFD
AAKADGVTTA YGMTYDANNR LAFVMQLADG KSAAQWKVNR DLTGNVFAII ALGDIPQATE
FISRDAAHRV QYGYNPTGDF YLRYDRRGRI DNFKFNEYAS PANGGIRRVF KARFGYSPDG
RVVSRTGTVA NDGSVLDLND GTDIPISGDE TNQWIDNYNY GDSPVGPPAN LQGARRLLGD
NFLGTSTVCS GCHFSAGLID GTVRGIAMVY RLLQNPVVRY GIGQGARKAA ENWDRIKQMC
KPAAETEVDG IPPGRITSEY TDITTGNSMR NIRTDVGKAE FEANLAESGY AQTLSKDGKA
DIFTKGESQY TVREYSNSGA MTADVKVSGV NIAKIRLGGK
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