Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_5042 |
Symbol | |
ID | 6279966 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | + |
Start bp | 1196281 |
End bp | 1197279 |
Gene Length | 999 bp |
Protein Length | 332 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642616133 |
Product | transcriptional regulator, AraC family |
Protein accession | YP_001888776 |
Protein GI | 187919745 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.363358 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 0.505144 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCGCG ACGCGCTCAC GCCTGTCGAG CCCGAGGCCG ATTCGCCGCT GTCCGGGCTC GCGCACGTCG GTTTTCTGAC GCTGCCGAAC TTTTCGATGA TCGCGTTCAC CAGCGCGGTC GAGGTACTGC GCATGGCCAA CTACGTGGGC CGCGCGCAGC ACTACCGGTG GTCGGTGATT ACGCCGGACG GCGAGCCTGC GCGAGCGAGC AACGGCATCA CGGTGAAGCC CACCACGACG CTCGCTGAAG CCGGCATGCC GGATGTGCTG ATCGTCTGCG CCGGCTGGCA CGTGCGAGAT TACGTGGACG ATACGGTGAT CGCGCTGCTG CGCGAGGTCG CGCAAAAGGG CGTGCCGCTC GGCGGTATTT GCACGGGCCC GTTTGCGTTG CTGGCCGCGG GCCTGCTCGA CGGCTATCGC TGCACGGTGC ACTGGGAAGA CATGTCGCCG TTGCACAAGA GCTACCCGCA CGTGCGTTTT GCCGACGAAC TGTTCGTGAT CGACCGGGAT CGCATGACCT GCACCGGCGG CACCGCGCCG CTCGACCTGA TGCTGAAACT GGTGGGCATG CGGCTCGGTC ATGCGGTGGC GGCGCAGGTG TCCGAGCAGT TCATCGTCGA ACGGATTCGC GGCTCGACCG ATTACCAGCA TATTCCCGTC GACGCGCGGG TCGGTTTCTC GCGCGCGGAA CTCGTCGAGG TGGTGCGGCT GATGGAAGCG AATATCGAGG AGCCCTTATC GCTCGACGAA CTCGCGCGGC TCGTGCATCT TTCGCAGCGG CATTTGCAGC GCATGTTCAA GATGTTCCTG AGCGTGTCGC CCACGCACTA TTACCTGACG CTGAGATTGC GGCGCGCGCG CGAGTTGCTG CGGAATACGG ACGCGTCGAT TGCGCGTGTG ACGACCGTGT GCGGTTTTCA TTCGGCGTGT CATTTCAGCA AGGCGTATCG CGCGCAGTTC GGTCATGCGC CGAGTGTCGA GCGGCGCTTG TCTGCTTAG
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Protein sequence | MKRDALTPVE PEADSPLSGL AHVGFLTLPN FSMIAFTSAV EVLRMANYVG RAQHYRWSVI TPDGEPARAS NGITVKPTTT LAEAGMPDVL IVCAGWHVRD YVDDTVIALL REVAQKGVPL GGICTGPFAL LAAGLLDGYR CTVHWEDMSP LHKSYPHVRF ADELFVIDRD RMTCTGGTAP LDLMLKLVGM RLGHAVAAQV SEQFIVERIR GSTDYQHIPV DARVGFSRAE LVEVVRLMEA NIEEPLSLDE LARLVHLSQR HLQRMFKMFL SVSPTHYYLT LRLRRARELL RNTDASIARV TTVCGFHSAC HFSKAYRAQF GHAPSVERRL SA
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