| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5041 |
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| Symbol | |
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| ID | 6279989 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 1195371 |
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| End bp | 1196273 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642616132 |
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| Product | choline ABC transporter, permease protein |
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| Protein accession | YP_001888775 |
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| Protein GI | 187919744 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4176] ABC-type proline/glycine betaine transport system, permease component |
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| TIGRFAM ID | [TIGR03416] choline ABC transporter, permease protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.503755 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGAAG TCATTCCACT TGGCGCCTGG GTCGATCACG GCGTTCACTA CCTGCTCGAC
CACGACGCAA AAACTTTCGA TTCGATCGGC AAGGTGATCG AGAGCTTTGC CGCGGTGATC
GAACACGGCT TGCAAGCAGT GCCGATGTGG GCGCTGATGG CGTTCTTCGT CGGCATCGGG
CTATGGCGGG TGGGCTGGCG TTTCGCGCTG TTCACGCTGC TCGCCATGCT GCTGATCTAT
GGCACCGGGT TCTGGGATCA GATGGTGATC ACCCTCGGCC TGACCTTGTC GTCGACGTTG
ATCAGTCTGC TGCTTGGCGT GCCGCTCGGC ATCTGGACCG CGAAGAGCCG TACCGTCGAG
ATGATCGTGC GCCCCGTGCT GGATTTGATG CAGACCATGC CGGCGTTCGT CTACCTGATT
CCGGCCGCGA TGCTGTTCGG TCTCGGCCGC GTGCCGGGGA TTCTCTCCAC CGTGATTTTC
GCCATGCCGC CGGCGGTGCG TCTCACGTCG CTCGGCATCA AGCATGTGAA TCGCGAGATC
GTCGAAGCAG GGCAGGCGTT CGGCTGCACG CCGTTGCAAC TGCTCTACAA GGTGCAGTTT
CCGAATGCGC TGCCGTCCAT CATGACCGGC GTCAACCAGA CCATCATGAT GGCGCTCTCC
ATGGTGATCA TCGCGTCGAT GGTCGGCGCG GGCGGTCTCG GCAACGACGT GCTGGCCAGT
ATTCAGCGGC TCGACATCGG GCTCGGCTTT GAAAGCGGAC TCTCGGTGGT GATGCTCGCG
ATCATTCTTG ACCGCATCAC GGAGAGCTTC GGCCGTTCGC CGGGCACGGC GCGCGCGCCG
CTGCTGTCGG GCCTGCGTAG CGTCATGAAA GTGCGCCGCC AGCCGGCCGC GCAACACGGC
TGA
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| Protein sequence | MSEVIPLGAW VDHGVHYLLD HDAKTFDSIG KVIESFAAVI EHGLQAVPMW ALMAFFVGIG
LWRVGWRFAL FTLLAMLLIY GTGFWDQMVI TLGLTLSSTL ISLLLGVPLG IWTAKSRTVE
MIVRPVLDLM QTMPAFVYLI PAAMLFGLGR VPGILSTVIF AMPPAVRLTS LGIKHVNREI
VEAGQAFGCT PLQLLYKVQF PNALPSIMTG VNQTIMMALS MVIIASMVGA GGLGNDVLAS
IQRLDIGLGF ESGLSVVMLA IILDRITESF GRSPGTARAP LLSGLRSVMK VRRQPAAQHG
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