| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5040 |
|---|
| Symbol | |
|---|
| ID | 6278961 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 1194200 |
|---|
| End bp | 1195378 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642616131 |
|---|
| Product | glycine betaine/L-proline ABC transporter, ATPase subunit |
|---|
| Protein accession | YP_001888774 |
|---|
| Protein GI | 187919743 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4175] ABC-type proline/glycine betaine transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01186] glycine betaine/L-proline transport ATP binding subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.187748 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCCC CGAAGGTCGT GGTCGAAGGG TTGTGCAAGG TGTTCGGCAC CAACCCGAAA
CAGGCGATCG GCATGCTGGC AGGTGGCGCG ACGAAAGAGG AAGTGTTTGC GCGCACCGGT
CAGATTGTCG GCGTCCACAA CGTATCGTTC GAAGTCAAGG AAGGCGAGAT CTTCGTGCTG
ATGGGCCTGT CCGGCTCCGG CAAGTCGACG CTGATCCGCC TGATCAACCG CCTCGTCGAG
CCGACGGCCG GCAAGGTGCT GATCGACGGC CGCGACGTGG CCAGCGTGCC GCGCTCCGAG
TTGACGGCGC TGCGCCGCAA GGACATGAGC ATGGTGTTCC AGTCCTTCGC GCTGATGCCG
CAGCGCACCG TGCTGTCCAA CGCGGCGTTC GGGCTCGAAG TGGCGGGCGT GGGTCGCAAG
GAGCGCGAGA AGCGCGCGAT GACCGTGCTC GAGCAGGTCG GCCTCGCGCC GTTCGCGCAA
AAGCTGCCCG CGCAACTGTC CGGCGGCATG CAGCAGCGCG TGGGCCTCGC GCGGGCGCTC
GCGGTCAACC CGTCGCTGAT GATCATGGAC GAGGCATTTT CCGCCCTCGA TCCGCTCAAG
CGCAAGGAAA TGCAGAACGT GCTGCTCGAT CTGCAACGCG AACAGCAGCG CACCATCCTG
TTCGTGTCGC ACGATCTGGA AGAGGCGATG CGCATCGGCA CCCGTATCGC GATCATGGAA
GGCGGCCGGG TCGTGCAGGT CGGCACGCCG CAGCAGATCA TCACCAATCC CGCCGACGAT
TACGTGCGCG CCTTCTTCGA AGGCATCGAC ACCAGCCGTT ATCTGACCGC CGGCGATCTG
ATGCAGACCG ACGCCGTGCC GCTCATGCAG CACTCGCCGC AGATCGACGC GTCGAGCGTG
GCCGCCACCC TCAACGGCAG CGCCGACTAC GCGTTCGTGC TGGACAGCGA GCGCAAGATT
CGCGGCTTCG TATGCCGCGA CGCGATGGGC AGTGCCTCGC CGCAGGTCAA CCAGATCGAA
TGCATCCGCC GCACCACGCC GCTCGACGAC GTGGTCGAAC TCGTGGTGGC GAGCCGCGCG
CCGCTGCCGG TCGTCGAAGC CGACGGTTCT TACTGTGGTT CGGTCAACAA GACGAACGTG
CTGAACGTTC TCACGCGCCA TCGGAGTTCC CATGTCTGA
|
|---|
| Protein sequence | MNSPKVVVEG LCKVFGTNPK QAIGMLAGGA TKEEVFARTG QIVGVHNVSF EVKEGEIFVL
MGLSGSGKST LIRLINRLVE PTAGKVLIDG RDVASVPRSE LTALRRKDMS MVFQSFALMP
QRTVLSNAAF GLEVAGVGRK EREKRAMTVL EQVGLAPFAQ KLPAQLSGGM QQRVGLARAL
AVNPSLMIMD EAFSALDPLK RKEMQNVLLD LQREQQRTIL FVSHDLEEAM RIGTRIAIME
GGRVVQVGTP QQIITNPADD YVRAFFEGID TSRYLTAGDL MQTDAVPLMQ HSPQIDASSV
AATLNGSADY AFVLDSERKI RGFVCRDAMG SASPQVNQIE CIRRTTPLDD VVELVVASRA
PLPVVEADGS YCGSVNKTNV LNVLTRHRSS HV
|
|---|
| |