Gene Bphyt_4978 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_4978 
Symbol 
ID6278556 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp1114729 
End bp1115685 
Gene Length957 bp 
Protein Length318 aa 
Translation table11 
GC content64% 
IMG OID642616064 
Producttranscriptional regulator, AraC family 
Protein accessionYP_001888712 
Protein GI187919681 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.327567 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.11746 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATGCAG TGACACCGAT ACCGGCCGGG CAACCGAAAC CGCTGCTGCA ACCGCTGCCG 
CATAGCGGTT CCCGCCTCAC GTTGCGCTCG AGCGGATTGC TCGGCTGGCA GGGCTTCGGC
GCGGAACTGG TCAACGTGTC TGCCGGGCTG CACCGTATTC CCGCGTTCAA GTATCACCGG
GTGGGCGTGC ATGTCGGCGC GCCGGTCAGG GCGCGCTGCC TGTGCAACGA GCGCGGCCAC
TCGCGAATCC AGGCGCATGG CGACGCCGAC GTGATTCCCG CCGGTCTCGA CGGGCAGTGG
AGCGACGAGG CCGCCTGCAC GATTTTCAGC GTGTGGATCA GCGAGGCGTT CGCGCAACGG
ACCGTCGAGC AACTGTCGTT GAAATCCGGC GATGCGCAAT TGCGTCCGCA ATTCCAGATG
CGCGATCCGC GCTTCCAGCA TCTCGCCTGG GCCTTGCGCG CCGAGCTCGA AGCGGACGAG
GCATCCGATC CGCTCTACGC CGAAAGCCTG TGTACGGCGA TGGTGGTGCG CCTGATCGGC
GGTGCGCCAA CGCTCGAGAA CAAGCGGCGC ACGCTCGCGC CGAAAACGGC CGCGCGCGTG
ATCGAGTTCA TTGAGGCGCA TCTCGACCAG CGTCTCACGC TAAGCGAACT GGCCGCGCTC
GTCGAGTTGA GCGTGCCGCA TTTCAAGGTG CTGTTTCGCG AGACGCTCGG CATGCCGGTG
CATCGATACG TGGTGCAGCG GCGCGTGGAG CGCGCGCGAA CGTTGCTGTT GGAAGGCAAG
CTCAATGCGA GTCAGATTGC GCTCGATACG GGCTTCGCGC ATCAGAGTCA CATGGCGCAT
TGGATGGGCC GCCTGTTGGG CGTGACGCCG CGCGAGCTGA TCAGATCAGG TGCGAATGCG
GGCAATATTG TCGAGCTCGA TTCGAACCAG AGCCGCAACA TTGCCATACC GCGATAA
 
Protein sequence
MNAVTPIPAG QPKPLLQPLP HSGSRLTLRS SGLLGWQGFG AELVNVSAGL HRIPAFKYHR 
VGVHVGAPVR ARCLCNERGH SRIQAHGDAD VIPAGLDGQW SDEAACTIFS VWISEAFAQR
TVEQLSLKSG DAQLRPQFQM RDPRFQHLAW ALRAELEADE ASDPLYAESL CTAMVVRLIG
GAPTLENKRR TLAPKTAARV IEFIEAHLDQ RLTLSELAAL VELSVPHFKV LFRETLGMPV
HRYVVQRRVE RARTLLLEGK LNASQIALDT GFAHQSHMAH WMGRLLGVTP RELIRSGANA
GNIVELDSNQ SRNIAIPR