Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_4978 |
Symbol | |
ID | 6278556 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | + |
Start bp | 1114729 |
End bp | 1115685 |
Gene Length | 957 bp |
Protein Length | 318 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642616064 |
Product | transcriptional regulator, AraC family |
Protein accession | YP_001888712 |
Protein GI | 187919681 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.327567 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.11746 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATGCAG TGACACCGAT ACCGGCCGGG CAACCGAAAC CGCTGCTGCA ACCGCTGCCG CATAGCGGTT CCCGCCTCAC GTTGCGCTCG AGCGGATTGC TCGGCTGGCA GGGCTTCGGC GCGGAACTGG TCAACGTGTC TGCCGGGCTG CACCGTATTC CCGCGTTCAA GTATCACCGG GTGGGCGTGC ATGTCGGCGC GCCGGTCAGG GCGCGCTGCC TGTGCAACGA GCGCGGCCAC TCGCGAATCC AGGCGCATGG CGACGCCGAC GTGATTCCCG CCGGTCTCGA CGGGCAGTGG AGCGACGAGG CCGCCTGCAC GATTTTCAGC GTGTGGATCA GCGAGGCGTT CGCGCAACGG ACCGTCGAGC AACTGTCGTT GAAATCCGGC GATGCGCAAT TGCGTCCGCA ATTCCAGATG CGCGATCCGC GCTTCCAGCA TCTCGCCTGG GCCTTGCGCG CCGAGCTCGA AGCGGACGAG GCATCCGATC CGCTCTACGC CGAAAGCCTG TGTACGGCGA TGGTGGTGCG CCTGATCGGC GGTGCGCCAA CGCTCGAGAA CAAGCGGCGC ACGCTCGCGC CGAAAACGGC CGCGCGCGTG ATCGAGTTCA TTGAGGCGCA TCTCGACCAG CGTCTCACGC TAAGCGAACT GGCCGCGCTC GTCGAGTTGA GCGTGCCGCA TTTCAAGGTG CTGTTTCGCG AGACGCTCGG CATGCCGGTG CATCGATACG TGGTGCAGCG GCGCGTGGAG CGCGCGCGAA CGTTGCTGTT GGAAGGCAAG CTCAATGCGA GTCAGATTGC GCTCGATACG GGCTTCGCGC ATCAGAGTCA CATGGCGCAT TGGATGGGCC GCCTGTTGGG CGTGACGCCG CGCGAGCTGA TCAGATCAGG TGCGAATGCG GGCAATATTG TCGAGCTCGA TTCGAACCAG AGCCGCAACA TTGCCATACC GCGATAA
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Protein sequence | MNAVTPIPAG QPKPLLQPLP HSGSRLTLRS SGLLGWQGFG AELVNVSAGL HRIPAFKYHR VGVHVGAPVR ARCLCNERGH SRIQAHGDAD VIPAGLDGQW SDEAACTIFS VWISEAFAQR TVEQLSLKSG DAQLRPQFQM RDPRFQHLAW ALRAELEADE ASDPLYAESL CTAMVVRLIG GAPTLENKRR TLAPKTAARV IEFIEAHLDQ RLTLSELAAL VELSVPHFKV LFRETLGMPV HRYVVQRRVE RARTLLLEGK LNASQIALDT GFAHQSHMAH WMGRLLGVTP RELIRSGANA GNIVELDSNQ SRNIAIPR
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