| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4938 |
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| Symbol | |
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| ID | 6277868 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 1067651 |
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| End bp | 1069129 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642616024 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001888672 |
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| Protein GI | 187919641 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0911189 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.262265 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGGATA TCCTCCCGCG CGGCCCCGCG CCCGCCAACG ACGATTCCGA GATGTTCGAA
CTCGCGCCCG TCTCGCTCTG GCTCGAAGAC TTCAGCGGCG TGCGCTCTTT GTTCGATGCA
TGGCGGGCAG ACGGCGTCAC CGATCTGCGC GCGCATTTCG CCGCCAATCC GGACTGCGTC
GCGCAATGCG CGCACAGCAT CCGCGTCATC AAGGTCAATC AGAAGACGCT GACGCAATTC
GAGGCCGCCG ATTTCGACGC GCTCACCAGC AATCTCGCCT CGGTATTCCG CGACGACATG
CTCAAGACGC ACCTGGAAGA GTTATGCCAG TTGTGGGCCG GCCAGTCGCA GTTCACCAGC
CAGACGGTCA ACTACACACT CGGCGGACGC CGCCTCGACG TGTTGCTCAA GGGCGCCGTG
CTGCCCGGCC ACGAGGCGCG CTGGGACCGC GTGCTGGTGT CGGTCGAAGA CATTACGGAA
CTGGAAGGCG CGCGGCATCG CGTGACGCTT GCCGAGCAGT ATGTGCGCGG CCTGTTCGAA
TATTCGCCGG TATCGCTCTG GGTGGAGGAT TTCAGCGCGG TCAAGCGTCT GCTCGACGAG
GCGCGGGCAG CGGGCATCAA CGATTTCCGC GTGTTCACCG ACGTGCATCC CGAGTTCGTC
GAGCGCTGCA TGCAGGAAAT CCACGTGCTC GACGTGAACC AGCACACGCT CGACATGTTC
GCGGCGAAAG ACAAGAAAAC GCTGCTATCG CGTCTCACCG ACGTGTTCCG CGACGACATG
CGTCCGCATT TCCGCGAGCA GCTGGTCGAT CTGTGGGACG GCAAGCTGTT CCAGCAGCGC
GAAGTGCTCA ACTATTCGCT CGACGGCAAC GAGGTGCATG TGCACCTGCA GTTTTCCGTA
CTGCCGGGCC ATGAAAAGAC CTGGGACCTG GTGCTGGTGG CGCTCACGGA CATCACGGCG
CGCAAGAAGG CCGAAGCCTA CCTTGAGTTC CTTGGCAAGC ACGACGTGCT GACCAAACTG
CGCAACCGCT CTTTCTACGT GGACGAACTC AACCGGCTCG AACGCAAGGG CCCGTGGCCC
GTGACGATCA TCATGGCCGA TCTGAACGGT CTGAAACGCG TCAACGATCA GCTCGGCCAC
GCCGCGGGCG ACGCGCTTTT GCGGCGCGCC GGCGAGGTGC TTGCCAAGGC GACCGAGACG
CCGTTTCATG CGGCGCGCAT TGGCGGCGAC GAGTTCGCGA TCCTGATGCC GGACACCGAC
GAGCGCGGCG GCGCCGCGAT GGTCGACGCG ATCCGGCAAC TGGTGGAACT GAACAATCAG
TTTTATCCTG GCTCGCTGCT TAGCTTCTCG ATGGGCGCGG CGACCTGCCA GCGCGGCGAC
CGGCTCGAAG CGGGCGTGCA GCGCGCCGAT CTGCTGATGT ACGAGGAAAA GCGCGCGACC
TACGCGAGCC AGCCGGCTGG CGACCCGGCG GGCCGCTGA
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| Protein sequence | MLDILPRGPA PANDDSEMFE LAPVSLWLED FSGVRSLFDA WRADGVTDLR AHFAANPDCV
AQCAHSIRVI KVNQKTLTQF EAADFDALTS NLASVFRDDM LKTHLEELCQ LWAGQSQFTS
QTVNYTLGGR RLDVLLKGAV LPGHEARWDR VLVSVEDITE LEGARHRVTL AEQYVRGLFE
YSPVSLWVED FSAVKRLLDE ARAAGINDFR VFTDVHPEFV ERCMQEIHVL DVNQHTLDMF
AAKDKKTLLS RLTDVFRDDM RPHFREQLVD LWDGKLFQQR EVLNYSLDGN EVHVHLQFSV
LPGHEKTWDL VLVALTDITA RKKAEAYLEF LGKHDVLTKL RNRSFYVDEL NRLERKGPWP
VTIIMADLNG LKRVNDQLGH AAGDALLRRA GEVLAKATET PFHAARIGGD EFAILMPDTD
ERGGAAMVDA IRQLVELNNQ FYPGSLLSFS MGAATCQRGD RLEAGVQRAD LLMYEEKRAT
YASQPAGDPA GR
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