| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4923 |
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| Symbol | |
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| ID | 6278378 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 1050281 |
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| End bp | 1054147 |
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| Gene Length | 3867 bp |
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| Protein Length | 1288 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642616009 |
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| Product | type VI secretion protein IcmF |
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| Protein accession | YP_001888657 |
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| Protein GI | 187919626 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.163369 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGACGCA TTCTCAACGT GTTGACCCAC ACACGCACGC TCTCGATCAT CGGCTTGCTC
GCGCTCGCTG CTGTTTTATT CATCGGCGCC GATACCTTGC AGATCGATCT GATGTGGCCG
GCCATCGTGC TCGGCGCCGT GATCGCGTTG TGGCTGCTGG TGTGGATCGT GCGCCGCCTG
CGCGCGCGCC GTGCGAACCG CAAGCTCGGC GAAATGCTCG AGCAGCAGGC CGAGAAGCAG
GCCGAGGCCG GTCCCGCGCC CACGCCCGCG CGCCAGGCTG AACTCGACGT GCTGCGCACG
CGTCTCGTCG ATGCGGTGAA GACCATCAAG ACCTCGAAGA TCGGTCAGGT CTCGGGCGGC
TCGGCGCTCT ATGAGTTGCC GTGGTACATC GTGATCGGCA ACCCCGCCGC GGGCAAGAGC
AGCGCGGTAT TGAACTCGGG CTTGCAATTC CCCTTCGCCG ACAAGAACAA CGCGGTGATC
CACGGCATTG GCGGCACGCG TAACTGCGAC TGGTTCTTTA CGACCGAAGG CATTCTGCTC
GACACCGCCG GCCGCTATTC CGTGCATGAG GAAGACCGCA CCGAATGGCT CGGCTTTCTC
GGGCTGCTCA AACGTTTCCG GCCGAAGGCG CCGATCAACG GCATCATCGT CACGGCCAGC
ATTGCGGAAC TGACCAGCAG CAAGCCTGAA TTCGCGATCA ATCTCGCGAA AAACCTGCGC
CAGCGCGTGC AGGAATTGAC CGAGAAGCTC GAAGTGTTCG CGCCGGTGTA TGTGATGTTC
ACCAAGGCCG ACCTGATTAC CGGCTTCACC GAATTCTTCA GCGGCAGTGA GCGTCACGAA
TATGATCGCG TGTGGGGCGC CACCCTGCCC TACGAGCCAG ACGAGAAGCG CGACGTGGTC
GGTTTGTTCG ACGAACACTT CGAAGAGCTG TACGACGGCC TGAAAGAGAT CAGCGTTGCG
CAAATGTCGA TCAATCGCGG CAACAAGCTC TCGCCGGGTC AATTGAGCTT TCCACTCGAG
TTCTCGACGA TTAAGCCCGC GTTGCGCGCC TTTCTCGCCA CGCTGTTCGA GACCAATCCG
TTCCAGTACA AGCCGATTTT CCGCGGCTTC TACTTCACGA GTGCATTGCA GGAAGGCGAA
ACGAATAGCG CGGCGGCCAC GCGCATCGCC AACCGTTTCG GCCTGAGTTC GGACGGCCTG
CCCAAGCCGC ATAGCGCGTT CTCGAAGAAC GGGTTCTTCC TGCGCGATCT GTTCTCGAAG
GTGATCTTTG CCGACCGGCA AACGGTCAAG CAATTCGCCA GCCCTGCCAA GACGCGCATG
CGCTATGCGA CCTTCTTCGG CTTCGTTGCG GTGCTCGCAC TGGCGCTCGG CGGCTGGACC
TGGTCCACGG TCAATAACCA GCAGCTCACC GCGAACGTGC AAGCCGACCT CGACAATGTC
GTGCGCCTGC AGCAGAACCG CAACGATCTG CAATCGCGCC TGCAAGCCAT GGACGTGCTC
GAGGACCGCA TCGATCAACT CGAACAGTTT CGCCGTGACA GGCCGCTCGC GGTATCGCTC
GGTCTGTATC AGGGCGATCG CCTCGAACAG CGTCTGCTCA CCGAGTACTA CAACGGTGTG
CGGCAGATCC TGCTCGATCC GGTTTCGCAG AATCTCGCGT CGTTCCTGAA GGACGTCAAC
GCGCACCCCG ACCAGCTCGT GCCGTTGAAC CGCGCGCCGG ACGCCGCCGC GATTCCGGTC
TCCACCCACT CGGCCATGAG TGCGAACAGC CAGGGCGGCT TGTATAGCGA CGCCTCGCCG
ACCAACGTCG AAGATGCGTA CAACGCGCTC AAGACGTATC TGATGCTGAG CGACAAGCGT
CACGTGGAAA CGGCTCACCT GACCGATCAG GTCGCGCGCT TCTGGCGCGG CTGGCTCGAG
ACGAATCGCG GCAACATGCC TCGTGACGAG ATGATCCGCA GCGCCGAGCG CATGATCACG
TTCTACCTCG CGCGCGTGTC CGACGACGAT TGGCCGATGA TCGACCAGAA TCTCGGCCTC
GTCGATCAAA CGCGAGAGAA CTTGCGTCGC GTGGTGCGCG GCATGCCGGC GCGTCAGCGC
GTCTACGAAG AAATCAAGGC GCGCGCCTCG ACCCGTTTCG CGCCGATGAC GGTCGCGCGC
ATCGTCGGCG AAAACAATAC CGCGCTGGTG GCGGGCAGCT ATGCGATCCC CGGCACCTTC
ACGCGTGAAG CCTGGTTCCA GTACGTGCAG CCCGCCATTC GCGATGCCGC AACGAAAGAG
TTGCAGGCAA AGGACTGGGT GCTTAACACA TCGGCTCACG ACGATCTGAC GCTGGAAGGC
AGCCCCGAAC AGATCCAGAA AGCGCTCGTC GCGATGTACA AGACCGAGTA CGCGATGCAC
TGGCAGAAGT TCATGCAAGG CATTGCGGTG CAGAGCTTCG GCAGCTTCGG CCAGGCCGTG
GATGCAATGA ACCGCTTGGG CGATCCGCAG GATTCGCCGA TCCGCAAGGT GCTCGAAACC
GCGTACGACC AGACTTCGTG GGACAACCCG TCGCTCTTCA ACGCGAACCT GAAGCGCGCG
CAAACCGGCG TGACGAGCTG GGTCAAGAAC CTGTTCTCGC GTGCGCCCAC TGGCCAGATC
AACGCGAACA TCGACATCAA CGGCAATCCG GTTGAAGTGC CGATGGGTCC GATCGGCCAA
GAGTTCTCGG CATTGGGCCG CATCGTCGTG AGCGGCGACA ACGGTTCGAT GCTCAAGGGC
TATATGGACA CGCTGTCGAA AGTCCGCACG CGCTTTAACG TGATCAAGAA TCAGGGCGAT
CCGGGACCGG GCGCGCGTCA ACTGATGCAG CAGACGCTCG ACGGCAGCGG CTCCGAACTC
GCCGATTCGC TGAAGTATGT CGACGAACAG ATGCTCACGG GCCTCACCGA CTCGCAGCGC
AAAGCGCTGC GTCCGCTGCT CGTGCGTCCG TTGATGGCGG CGTATGCGGT GGTGATCCAG
CCGGCCAGCG TCGAAGTCAA CAAGGTGTGG AACGCGCAGG TGTATCAGAG CTTCCAGAAC
TCGCTCGCGA ACAAGTACCC GTTTGCCAGC GACGCGAAGG TCGAAGCCGG CGCCGGCGAA
ATCGCCCAGG TGTTCGGGCC GGACGGCGCG ATCGCCAAGT TCGTCGGCAC CACGCTCGGG
CCGCTCGCGG TGCGCCGCGG CGACACGTTG ACGGCCCGCA CATGGGGCGA CATGGGCCTT
GCCCTCACGC CTGACTTCAC GAGCGGCTTC GCGCGCTGGG TGGCGCCGCT CGCCGGCGGC
GCGGCGGGCG CAACGGCGGG CCAGGGTTCG GCCGAACCGC AGACCGTGTT CCAGATCCTG
CCGCAGCCAA GCAGCGGCAC GACGGAATAC ACGCTGGCGA TCGACGGCCA GCAGATGCGC
TACCGCAACA CGCCGCCGCA GTGGACCAAC TTCGTGTGGC CGAATCCGTC GGGCTCGCCT
GGCGCGACAT TGAGCGCCAC GACCTTCGAC GGCCGCACGC TGCAACTGGT CAACGAGCCG
GGCCGCTACG GCCTGGAGAA GCTGATCAAC TCGGCGCAGC GCAAGCGTCG TCCGGACGGC
ACGTTCGACC TGTCGTGGAC GCAAGGTGGC GTGACGGTGG CGGTCAGCAT GCGCATCATC
AGCACGTCGC AGGCGTCGAG CGGCAGCAGC GATGCGCCGC AACAGCAAAG CCTGCGCGGC
TTGCGGCTGC CGTCCTCGGT GGCGGATGTG AGCGCGGCGG CGAATTCGGT CAATGCGACG
GCCGCGGGTG CGCCCGCGCC GGCCACGCCC GCGACACGGC CGGCTGCGGC CGCCACCGCG
GTTTCGAATA CAGGGGGTGC GCAATGA
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| Protein sequence | MRRILNVLTH TRTLSIIGLL ALAAVLFIGA DTLQIDLMWP AIVLGAVIAL WLLVWIVRRL
RARRANRKLG EMLEQQAEKQ AEAGPAPTPA RQAELDVLRT RLVDAVKTIK TSKIGQVSGG
SALYELPWYI VIGNPAAGKS SAVLNSGLQF PFADKNNAVI HGIGGTRNCD WFFTTEGILL
DTAGRYSVHE EDRTEWLGFL GLLKRFRPKA PINGIIVTAS IAELTSSKPE FAINLAKNLR
QRVQELTEKL EVFAPVYVMF TKADLITGFT EFFSGSERHE YDRVWGATLP YEPDEKRDVV
GLFDEHFEEL YDGLKEISVA QMSINRGNKL SPGQLSFPLE FSTIKPALRA FLATLFETNP
FQYKPIFRGF YFTSALQEGE TNSAAATRIA NRFGLSSDGL PKPHSAFSKN GFFLRDLFSK
VIFADRQTVK QFASPAKTRM RYATFFGFVA VLALALGGWT WSTVNNQQLT ANVQADLDNV
VRLQQNRNDL QSRLQAMDVL EDRIDQLEQF RRDRPLAVSL GLYQGDRLEQ RLLTEYYNGV
RQILLDPVSQ NLASFLKDVN AHPDQLVPLN RAPDAAAIPV STHSAMSANS QGGLYSDASP
TNVEDAYNAL KTYLMLSDKR HVETAHLTDQ VARFWRGWLE TNRGNMPRDE MIRSAERMIT
FYLARVSDDD WPMIDQNLGL VDQTRENLRR VVRGMPARQR VYEEIKARAS TRFAPMTVAR
IVGENNTALV AGSYAIPGTF TREAWFQYVQ PAIRDAATKE LQAKDWVLNT SAHDDLTLEG
SPEQIQKALV AMYKTEYAMH WQKFMQGIAV QSFGSFGQAV DAMNRLGDPQ DSPIRKVLET
AYDQTSWDNP SLFNANLKRA QTGVTSWVKN LFSRAPTGQI NANIDINGNP VEVPMGPIGQ
EFSALGRIVV SGDNGSMLKG YMDTLSKVRT RFNVIKNQGD PGPGARQLMQ QTLDGSGSEL
ADSLKYVDEQ MLTGLTDSQR KALRPLLVRP LMAAYAVVIQ PASVEVNKVW NAQVYQSFQN
SLANKYPFAS DAKVEAGAGE IAQVFGPDGA IAKFVGTTLG PLAVRRGDTL TARTWGDMGL
ALTPDFTSGF ARWVAPLAGG AAGATAGQGS AEPQTVFQIL PQPSSGTTEY TLAIDGQQMR
YRNTPPQWTN FVWPNPSGSP GATLSATTFD GRTLQLVNEP GRYGLEKLIN SAQRKRRPDG
TFDLSWTQGG VTVAVSMRII STSQASSGSS DAPQQQSLRG LRLPSSVADV SAAANSVNAT
AAGAPAPATP ATRPAAAATA VSNTGGAQ
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