Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_4918 |
Symbol | |
ID | 6277982 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | + |
Start bp | 1043280 |
End bp | 1044374 |
Gene Length | 1095 bp |
Protein Length | 364 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642616004 |
Product | type VI secretion protein, VC_A0111 family |
Protein accession | YP_001888652 |
Protein GI | 187919621 |
COG category | [S] Function unknown |
COG ID | [COG3520] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03347] type VI secretion protein, VC_A0111 family |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.0191108 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAACCG CGCAGCGGCG AATCGATCCT GGCGTAGTCG AGCAGCTTCT CGACGAGCCG CATCGCTTCG AATTTTTTCA GGCGGTGCGG ATTCTCGAGA AGTGGTTCGC GCAGCAATCG CCATCTCAAC CCGGACGTCC CGGCGAAATT GTCGCGCAGC GAATTGCTTT TCGCAATTCG CTGTCGATGT CGTTCCCGCC GAGCGAGATT CACGGCGCGC AGTCTTATGA CGACGCAGGT GCGGCGCTGA AGGAAAAGTC GCAACGCACG GCAGCGCTCG AAGACGGTTC GCTGGACAAG GTGGATATCA CGCCGGCCTT TTTTGGTTTG CTCGGCGGGC AGGGCGCATT GCCGCTGCAC TACACCGAGC AGATCATCGC GCGTGAACAG ATCAAGCGCG ATCGTGCCGC GCGCGAGTTC TTCGACGTGT TTTCGAATCG CGCGACGGCG CTGTTCTACG CGGCGTGGAA GAAGTACCGT CTGCCGTTTC ACTACGAACT GGATCGCGAC GAACGTTACC TGCCGCTATT GCTCGCGCTC GCCGGCGTCG CCGACGACGA CACGCGCAAC AGCCTGCAAA GCGGCGAGGG CGCGCTATTC GACGAGGCGA TTGCCGGCTA CGCATTGGCC GCGCGGCATC GGCCGGTATC GGCGGCGTAT TTGCAACGCA CGCTCTCGGA GTACTTCAAG GTGCGGGTGC GCGTCGAGCA GTTCGTCGGC AAATGGTACG ACGTGCCGCG CGATCAATTG ACCTTGCTCG GCAGCGTCAA CGCGACGCTC GGCGCGACTG CGCTGGCGGG CGAGCGCGTC TGGCAGCGCG ACATGCGTGC GCGCCTCGTG ATCGGACCGC TCGACAAGGC CGATTACGAA GCGTTTTTGC CCGGCGCCGA TCGTGCGGTG GCGCTCGAAC GCATGCTCAC GCTGCTGGCC GGCGTTACGC TCGAATACGA GGTGTCGCTG GTGCTGCGCC GCGAAGCCGT CGGACCGAGC TTATTGAGCA AGGGCGCGCG CCTGGGTTGG GACGCATTCC TGTGCACTAA AGACGCCGAC CGTGACCGCG CGGATGCCCG CTACGAATTG CACGTGATTC ACTGA
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Protein sequence | MQTAQRRIDP GVVEQLLDEP HRFEFFQAVR ILEKWFAQQS PSQPGRPGEI VAQRIAFRNS LSMSFPPSEI HGAQSYDDAG AALKEKSQRT AALEDGSLDK VDITPAFFGL LGGQGALPLH YTEQIIAREQ IKRDRAAREF FDVFSNRATA LFYAAWKKYR LPFHYELDRD ERYLPLLLAL AGVADDDTRN SLQSGEGALF DEAIAGYALA ARHRPVSAAY LQRTLSEYFK VRVRVEQFVG KWYDVPRDQL TLLGSVNATL GATALAGERV WQRDMRARLV IGPLDKADYE AFLPGADRAV ALERMLTLLA GVTLEYEVSL VLRREAVGPS LLSKGARLGW DAFLCTKDAD RDRADARYEL HVIH
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