| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4915 |
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| Symbol | |
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| ID | 6278785 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 1040290 |
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| End bp | 1040793 |
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| Gene Length | 504 bp |
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| Protein Length | 167 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 642616001 |
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| Product | type VI secretion system effector, Hcp1 family |
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| Protein accession | YP_001888649 |
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| Protein GI | 187919618 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00101993 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.00306602 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGGATA TCTATTTAAA ATTCGGCAAT CCGGCGATCA AAGGCGAGTC TGCCGATAAG
GATCACGCTG GTTGGATCGA AATCGATTCG TGGAGTCACG CGATCACGCA ACCGCGTTCC
GCAACCGCCT CCACGGCAGG TGGTCACACC TCCGAGCGCT GCGAACATGC CGACATGCAG
TTCACGAAAG ACATCGACGT GGTCAGCCCG TTGATCTATC AACACGCGTC GGGCGGCACG
ACGTTCGACG AAGTCACGAT CGACTTCATG CGTTCGGACG GCGAAGGCAA TCGCATCAAG
TACCTGGAAG TGAAGCTCAA GTACGTGATC ATTTCGAGCG TGACGCCGAG CGTGGTGGGC
GAAGGCCTGC CGACCGAACA GTTCTCGCTG AAGTACGCTG CCGTGCAGTG GAAGTACACG
CAGCAGAAGA TCGGCGGCAA CCAGGGCGGC AACGCGCAAG GCGCGTGGAG CCTGACGAAG
AACGACAAGA CGTACGCGGT CTGA
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| Protein sequence | MKDIYLKFGN PAIKGESADK DHAGWIEIDS WSHAITQPRS ATASTAGGHT SERCEHADMQ
FTKDIDVVSP LIYQHASGGT TFDEVTIDFM RSDGEGNRIK YLEVKLKYVI ISSVTPSVVG
EGLPTEQFSL KYAAVQWKYT QQKIGGNQGG NAQGAWSLTK NDKTYAV
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