| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4858 |
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| Symbol | |
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| ID | 6278630 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 978791 |
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| End bp | 980806 |
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| Gene Length | 2016 bp |
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| Protein Length | 671 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642615945 |
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| Product | glycoside hydrolase family 28 |
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| Protein accession | YP_001888593 |
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| Protein GI | 187919562 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5434] Endopolygalacturonase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0653045 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.492882 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCAAACA TAGATAAAAC CAGCGGCAAG CGGACAACAT ATAAAACACC CGGCCAGGCT
GAACCGAATT CGCCCGCCCG CCGCGCGTTT ATCGTGCTGG CGGGAACGTC GGCGGGCGCG
ACGCTGCTCG GCGGCCTGTC CGCTTGCGGC GGTTCCGTCA ACGGCGGGAC CGCCACGCCG
CCGGTCGTGC AGGATCCGAT CTGGGGCACC TCGGGCGCCG CGACACAGAT CATCGCGTCT
TTGCAAGGCA TCACCCAGTC GATGTTTGCC AGCCGCGATT TCGTGGTCAC GCAGTACGGC
GCCGTACCGT GCGCCGTCGT CGCCGCGACC AATCCGTACA CAGGATCGGC ATCGGTCGCG
AGTCCCGGTT CGAACCAGAC CAACGCGGCC GCGTCGTTCG ACTCGCGCCC CGCGTTTCTC
GCTGCCATCC AGGCCTGCAA CGCCGCGGGC GGCGGACGCG TGGTCGTGCC GGCGGGCACG
TGGTACTGCG CCGGACCGAT CGTGCTGCTA AGCAATGTGA ACTTCCACCT CAGCGCGAGT
TGCACGATCT ACTTCAGCCC GAACCCGGCC GACTACGCGA AGGACGGCCC GGTCGCGTGC
GGCGCCAACG GCAATCTGTT CTACAGCCGC TGGCAGGCGA ACGATTGCCT GAACTACGGC
TCGCCCGTGT ACGCGCGCAA TCAGACCAAC ATCGCGCTGA CCGGCGAAGA CGCGACCTCG
GTGCTCAACG GACAAGCCAT GACACCGTTC GCCGGCAGCG GCAACACCGC CACGTGCTGG
TGGACCTTCA AGGGATCGAA TGGCGCGTAC GGATGCGTGA ATTCGTCGAC GCCGTCGCAG
GTGTATCTGA ATCCGAAGAA CGTCGATCTG AAAACCGCCG CGCCGGGCAT TTCCGATGCG
CTGTATGCGC AACTGACCAG TCCCACTACA CCCTGGCAGG AAGACCAGAA CTATCTGCCC
GCGCTCTCCG AAGCCGGCGT GCCGATCGCG CAGCGCGTCT TCGGCATTGG GCACTACCTG
CGTCCGTGCA TGGTCGAGTT CATCGGCTGC ACGAATGTGT TGATGGAGAA CTACACCACC
AACAACACGC CGTTCTGGCA GCATCATCCG ACCGATTGCA AGAACGTCGT GATTCGCGGC
GTGACGACCA ACAGCATCGG CCCGAATAAC GACGGCTTCG ATCCGGACGC GTGCAACAAC
GTGCTGTGCG ACAGCGTGAC GTTCAACACC GGCGACGACT GCATCGCGAT CAAATCGGGC
AAGGATCTCG ATACGCAATA CGGCCCCGCG CAGAATCACG TGATCCAGAA CTGCATCATG
AACAGCGGCC ACGGCGGCAT CACGCTCGGC AGCGAAATGG GCGGCGGCGT GCAGAACATC
TACGCCCGCA ACCTGCAGAT GCTGAATCAG AACTGGGCGA CCAATCCGCT GAACATCGCG
ATTCGCATCA AGACGAATAT GAATCGCGGC GGCTTCGTGA AGAACTTTTA TGTCGATAAG
GTCACGCTGC CGAACGGTGT CAGCCTCAAA GGCGCGGGCT ACGGCAGCGC GTTGCTGAGC
GGCAGCCCGA TCAACGCCAC GGTGCCGCTC GGCGTCGTGA CGGCGAGCGC GGCCAATCCG
TCGGCGGCAC AGGGCGGACT GATCACGTTC GACTGCGATT ATCAGCCGGC GAACGACGCC
ATTCGTATTC GTCCGGCAGT CGTGCAGAAC GTGAACATCT CGAACGTGAC GGCAAGCAAC
GTGACGCTTA ACGGTGTGAC CGGGTCGTGC TTTCAGGCAA TCGTCGCGCA AGGACCCGTT
GCGTTCGACT ACAACGGCGC GGCCCCGACG CCGACCATTC CGCCGATCAC CGGCGTGACG
ATCTCGAACT GCAATCTGGG CACAGCGGTT TCGGCCGGAC CCGCGAGCGC GACCACGCCC
GGACCGATCT ACGCGTACAA CGTGAACGGC ATTACGTTGA GCAATGTGGT GATCGGCGCG
ACGACTTACA ACACGACGGT CGTCGATAAG CGTTAA
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| Protein sequence | MANIDKTSGK RTTYKTPGQA EPNSPARRAF IVLAGTSAGA TLLGGLSACG GSVNGGTATP
PVVQDPIWGT SGAATQIIAS LQGITQSMFA SRDFVVTQYG AVPCAVVAAT NPYTGSASVA
SPGSNQTNAA ASFDSRPAFL AAIQACNAAG GGRVVVPAGT WYCAGPIVLL SNVNFHLSAS
CTIYFSPNPA DYAKDGPVAC GANGNLFYSR WQANDCLNYG SPVYARNQTN IALTGEDATS
VLNGQAMTPF AGSGNTATCW WTFKGSNGAY GCVNSSTPSQ VYLNPKNVDL KTAAPGISDA
LYAQLTSPTT PWQEDQNYLP ALSEAGVPIA QRVFGIGHYL RPCMVEFIGC TNVLMENYTT
NNTPFWQHHP TDCKNVVIRG VTTNSIGPNN DGFDPDACNN VLCDSVTFNT GDDCIAIKSG
KDLDTQYGPA QNHVIQNCIM NSGHGGITLG SEMGGGVQNI YARNLQMLNQ NWATNPLNIA
IRIKTNMNRG GFVKNFYVDK VTLPNGVSLK GAGYGSALLS GSPINATVPL GVVTASAANP
SAAQGGLITF DCDYQPANDA IRIRPAVVQN VNISNVTASN VTLNGVTGSC FQAIVAQGPV
AFDYNGAAPT PTIPPITGVT ISNCNLGTAV SAGPASATTP GPIYAYNVNG ITLSNVVIGA
TTYNTTVVDK R
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