| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4842 |
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| Symbol | |
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| ID | 6277355 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 958084 |
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| End bp | 958746 |
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| Gene Length | 663 bp |
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| Protein Length | 220 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642615929 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_001888577 |
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| Protein GI | 187919546 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.131186 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAACAAC TTGATCCCAC CGTCATCACC CACAACCTGC AGCCGATCGC CGCGGGCCTC
GCCACGACGC TCGGCACGTG GGCCGCAGGC GTGGCGATCG GCATCCTGAT CGGCTTTCTG
ATTGCGGTGC TGCAACTCTT TTGCGGACGC TGGGTGCGCG GCGTGTTGCG CCTCTATATC
GAACTGTTTC GCGGCACGCC GTTTCTGGTG CAACTCTTTT TGCTGTACTA CGGCGGCCCG
TCTTTCGGCC TCACGCTCGA ACCGATGACC GCCGGCGTGC TCGGCCTGGG CCTTTATGGC
AGCGCGTATT TTGCCGAAGC TTTTCGCTCC GGTTTTCAAT CCGTGCCGCC GGGTCATCTC
GAAGCGGCGT CGTGCCTCGG CCTCACGCGC TGGCAAGCGG TGTTGCGCAT TCAAGTACCG
CAAATGCTCG TCCTGATCGT GCCCGCGCTG ACCAATCTGA TCATCGTGTT GAGCAAGGAA
ACCGCCGTGT TGTCGATTGT CACCGTGCCC GAGCTTACGT TCGTGCTGAC CGGCATCGGC
TCGGCTACTT TTGCTTTCGT CGAAACGCTG CTGGTGCTGT GCGTGTGCTA TCTCGCGCTG
GTCGAACTGA CTTCACGAGC GGGTATGTGG GCCGAAACCC GCATCGCGCG CTTCATGGCA
TGA
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| Protein sequence | MQQLDPTVIT HNLQPIAAGL ATTLGTWAAG VAIGILIGFL IAVLQLFCGR WVRGVLRLYI
ELFRGTPFLV QLFLLYYGGP SFGLTLEPMT AGVLGLGLYG SAYFAEAFRS GFQSVPPGHL
EAASCLGLTR WQAVLRIQVP QMLVLIVPAL TNLIIVLSKE TAVLSIVTVP ELTFVLTGIG
SATFAFVETL LVLCVCYLAL VELTSRAGMW AETRIARFMA
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