| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4770 |
|---|
| Symbol | |
|---|
| ID | 6279018 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 877357 |
|---|
| End bp | 879015 |
|---|
| Gene Length | 1659 bp |
|---|
| Protein Length | 552 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642615852 |
|---|
| Product | natural resistance-associated macrophage protein |
|---|
| Protein accession | YP_001888505 |
|---|
| Protein GI | 187919474 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1914] Mn2+ and Fe2+ transporters of the NRAMP family |
|---|
| TIGRFAM ID | [TIGR01197] NRAMP (natural resistance-associated macrophage protein) metal ion transporters |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.478883 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.00361328 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCCACTC CAATCAACGT CTCACCACCC CGCAGCGCCG TTCTCGACGA CGCGCACCTC
GGCGACATCA AGGGCGCGCT CGGCACCATC GCCCATCACG ACACGGGGGC GCGCAACAGC
TGGTGGGCCC GCGTGCGCAC GCTGCTCGCG ATTCTCGGGC CCGGCCTCAT CGTGATGGTC
GGCGATAACG ATGCCGGCGC CTTCGGCACC TACACGCAAG CGGGACAGAA CTACGGCACC
ACTTTGCTGT GGACCATGCT GCTGCTCGTA CCCGTGCTGT TCGTCAATCA GGAGATGGTG
CTGCGTCTTG GCGCGGTGAC CGGCGTGGGT CATGCGCGGC TGATCTTCGA GCGCTTCGGC
AAGTTCTGGG GTGCCTTCAG CGTCGTGGAT CTGTTCATCC TGAACGCATT GACGATCTTG
ACCGAGTTCA TCGGTATAAC GTTCGTGTTG CAGTTCTTCG GCATTTCGAA AGTGGCCGGC
GTCTGCATTG CCGCGGCGGT GACCATGGCC GCGGTCAGCA CGGGCAATTT CCGGCGCTTC
GAACGCTTCG CCGTGGTGCT GTGCCTGATG AGCCTGTTGC TGGTGCCCGT GCTGGTGTCG
ATTCACCCGC TGGTTAGCCA GATGGCGCAC GATTTTCTGA TTCCGGGCTG GCCCGCGCAC
TCAAAACTCA GCGACGTGAT GCTGCTCGTG ATCGGCATTG TCGGCACGAC CGTCGCGCCG
TGGCAGTTGT TCTTCCAGCA GAGCTACATC GTCGATAAAC GCATCACGCC TCGCTTCATG
AAGTACGAAA AGGCCGATCT CTGGATCGGG ATCGTCTTCG TGATGATCGG CGCCGTGGCC
ATGATCTCGT TCTGCGCGGC GCTCTACGCG GGCAAGCCCG AATCCGGCCA TTTCACCGAC
GCGGGCGGCG TGATCGCCGA CCTCGAAAGC TACGCCGGCC GCACGCCCGC CGTGCTGTTC
GCCGTGGCGC TGCTCGACGC GTGCATCATC GGCGCGGCGG CGGTGTCGCT GTCCACCGCC
TACGCGATCG GCGACGTCTT CAAGATTCGC CACTCGCTGC ATCGCGGCGT GTCGGATGCG
AAGGGCTTCT ATCTCGTCTA CTTCGGCATC GTGGCGGCCG CGGCGACGCT GGTGCTGATT
CCGGGCAGCC CGCTCGGCCT TCTGACGGAA GCGGTGCAGA CGCTCGCCGG CGTGCTGCTG
CCGAGCGCGA CCGTGTTTCT GCTGCTGTTG TGCAACGACC GCGCGGTGCT CGGACCGTGG
GTGAACTCGA AGAAGCTCAA CGTCTTCACA GGCGCAGTGG TCTGGGTGCT CGTCATGCTA
TCCATCATTC TCACGGCTTC CGTCATGTAT CCGGATATCA CCGGCGAAGC GATGCTCGAA
GTGCTCGCAG GCGGCACGCT GATGGCCGTG GCAGGCTATG CGGCGACCGT CGTGGTCCGC
AAGCTGCGGC GGGAAACAGG GACCGCGTCG AATCACGACA GCGAGCTCAG GTGGTCGAAG
GAAACGCGCG CGGCCTGGCG CATGCCGCCT CTGGACGAAC TGCCGGCCCC GCAACTGACG
ATGTCCAAGC GGGTCTGGAT GGGCGTGCTA CGCGGTTATC TGATCGTGGC GGTCGCGCTG
GTGATCGTGA AGGTCGTGCA GATGACGCTG CTGCATTGA
|
|---|
| Protein sequence | MSTPINVSPP RSAVLDDAHL GDIKGALGTI AHHDTGARNS WWARVRTLLA ILGPGLIVMV
GDNDAGAFGT YTQAGQNYGT TLLWTMLLLV PVLFVNQEMV LRLGAVTGVG HARLIFERFG
KFWGAFSVVD LFILNALTIL TEFIGITFVL QFFGISKVAG VCIAAAVTMA AVSTGNFRRF
ERFAVVLCLM SLLLVPVLVS IHPLVSQMAH DFLIPGWPAH SKLSDVMLLV IGIVGTTVAP
WQLFFQQSYI VDKRITPRFM KYEKADLWIG IVFVMIGAVA MISFCAALYA GKPESGHFTD
AGGVIADLES YAGRTPAVLF AVALLDACII GAAAVSLSTA YAIGDVFKIR HSLHRGVSDA
KGFYLVYFGI VAAAATLVLI PGSPLGLLTE AVQTLAGVLL PSATVFLLLL CNDRAVLGPW
VNSKKLNVFT GAVVWVLVML SIILTASVMY PDITGEAMLE VLAGGTLMAV AGYAATVVVR
KLRRETGTAS NHDSELRWSK ETRAAWRMPP LDELPAPQLT MSKRVWMGVL RGYLIVAVAL
VIVKVVQMTL LH
|
|---|
| |