| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4748 |
|---|
| Symbol | |
|---|
| ID | 6277745 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 855696 |
|---|
| End bp | 856925 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642615830 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_001888483 |
|---|
| Protein GI | 187919452 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.376199 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.100184 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACG CGCCGGCAAT CCAGGTCAAG CGTCCGCGGC GCGGCCGCAT CGTGCTCGCA
ATCGTGGTGC TGGCGCTGAT CGCGCTGGTG GCGTTTCATG TGCTGCGCTC GAAGCCAGCC
AAGCCCACCG TGGCGCCGCA GGTCGTGACG GTCGCCGCCG CCACCACGGG ACCGATGCCG
GAAATTTTGA GCGAGCTAGG CACGGTGACG CCCGTCGCCA CCGTCACCGT GCTGCCGCAA
CTGAGCGGCT ACCTGACCGC CGTCGGCTAT CGCGAAGGCC AGGACGTGCA GAAAGGCCAG
TTCCTCGCGC AGATCGACCC GCGCCAGTAC GAAATCAGCA AGCGGCAAGC GGAGGCGCAA
CTCGCCAAGG ACAAGGCGGC GCTTGCCCAG GCGCGTGCCG ATCTCGCGCG CTATACGCAA
CTGAACGAAC ATAAGTCGAT CGCCGAGCAG ACCTATGCGG ACCAGAAGTT TCTCGTCCAG
CAGGACGAGG CGGCCATCAA GGCCGACGAA GCCAACATCG CCCAATTCGA TCTCGACCTG
ATCTACTGCC ACATCACCGC GCCGGTATCG GGCCGGGTCG GGTTGCGTCT CGTCGACCCG
GGCAACTACG TGACCGCATC GAGTCAACCC GGCATCGCGG TCATCACGAC AATGAAGCCG
ACCACCGTCC AGTTCACGGT TCCGCAAACC GCGCTCGATA AGGTGCTGCA GCGCGTCAAC
GCCGGTGCGC AGTTGCCGGT CACGGTGTTC AGCAGCGACA ACTCCCGGCA GATCGCGACC
GGCACGCTGT ACGCGATCAA CAACCAGATG GCGACCGCGA CCGGCACCGT CACATTGCGC
GCAACCGTCC CCAACGACGA CGAGGCGCTC TTTCCCAACG AGTTCGTCAA CGTCAAACTG
CTGGTCGATA CGCTGCAAAA CGCGGTGCTG GTGCCGACGC CGGCGGTGCA GAGCGGCGCG
CCGGGTGACT ACGTGTATCT GGTCAACGCC GACAATACGG TGTCGGTGCG CAAGGTCACG
CTGGGACCGG GCGACGGCCG GCATACGGTG ATCACGGCGG GGCTCGCCGC GGGCAACGTG
GTCGTCACCG ACGGCATGGA CCGTTTGAGC GACGGCGTGA AGATCAAGCC GTCGGCGGCG
CGGCCGGCTG CGGGTGCTTC GGGTGCTTCG GGTGCTTCGG GTGCTACGCC GCCCGGGTCC
GCGGCTAACG CAGCATCCGC AGCCTCATAG
|
|---|
| Protein sequence | MSDAPAIQVK RPRRGRIVLA IVVLALIALV AFHVLRSKPA KPTVAPQVVT VAAATTGPMP
EILSELGTVT PVATVTVLPQ LSGYLTAVGY REGQDVQKGQ FLAQIDPRQY EISKRQAEAQ
LAKDKAALAQ ARADLARYTQ LNEHKSIAEQ TYADQKFLVQ QDEAAIKADE ANIAQFDLDL
IYCHITAPVS GRVGLRLVDP GNYVTASSQP GIAVITTMKP TTVQFTVPQT ALDKVLQRVN
AGAQLPVTVF SSDNSRQIAT GTLYAINNQM ATATGTVTLR ATVPNDDEAL FPNEFVNVKL
LVDTLQNAVL VPTPAVQSGA PGDYVYLVNA DNTVSVRKVT LGPGDGRHTV ITAGLAAGNV
VVTDGMDRLS DGVKIKPSAA RPAAGASGAS GASGATPPGS AANAASAAS
|
|---|
| |