| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4735 |
|---|
| Symbol | |
|---|
| ID | 6279641 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 836967 |
|---|
| End bp | 838700 |
|---|
| Gene Length | 1734 bp |
|---|
| Protein Length | 577 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642615818 |
|---|
| Product | cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase |
|---|
| Protein accession | YP_001888471 |
|---|
| Protein GI | 187919440 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0492] Thioredoxin reductase
[COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.218635 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.914122 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAACG AGTCACGGCC GCAAGGCGAT ACGTCCGCTC CTCTGCCGCC CGCGGATGAA
AGCCATATCG ACGAAGGCGC GCTCGCCGAT GACCCGGCGG TACGCGATCA TCCGCGTTAC
CAGCAGATGT TTCCGGTCCT CACGGATGCT GAAGTCGACC GGATACGCCG CTTCGGCAGC
TTGTCCCGCT ACGTCAAAGG CGAATTGCTC TATCGCGCGG GAAGTCTTTG CCCCGGCATG
TTCGTTCTGC TGTCGGGCAA AGTTCGAATA GTTGGCCGCG ATGGCCTCGG CCATGAACGG
ATCATTCACA CCTATACGCA GCGCGGCGAG TTCACCTCGG ATGTCACCCA GCTCTCGAGC
AAGCCCGCAG TCGTCGACGC GCATGTCGTC GAAGATGTCG AAGCGGTATT GGTGCGGCCC
GACGAGCTCA GCGCCATGAT GATCAGTGAA GCGGATCTCG GCGAAAAGAT CATGCGCGCA
CTGATTCTGC GGCGCGTCCT CGTGATCGAG CGCGGCCAGG GGGTCATTCT CGTGGGCTCG
TCCAATCACC CACAACTGCT CGCTTTGCAG AATTTCCTGC GCCGTAATGC TTTTCCGAAT
ATGACGCTCG ATGCGCAGCG AGACCCTGAA GCCATTGCAC TGCTTGAACG CCTGACGCCG
CAGCCCAATG ACTTCCCGCT TGTCGTTTGT CCGAACGGTA CTGTGCTGAG AAATCCCGAC
GAGGGGCAGC TCGCATCGTG CCTCGGACTG ATTCCCGAGT TCGATCCGGC GCACGTCTAC
GATGTGGCGA TCGTCGGCGC GGGTCCCGCA GGACTTGCCG CAGCTGTCTA CGCGGCATCC
GAGGGACTGT CGGTGGCGGC GCTCGACTGC CGCGCACCCG GCGGCCAGGC CGGTACGAGC
GCGCGCATCG AAAACTATCT GGGCTTTCCC ACCGGCATCA CCGGGCAGGC GCTGGCGGGC
CGCGCGTTTG TCCAGGCGCA GAAGTTCGGC GCGCATATCG GCATTCCGTG CGAGGTCAAG
GCGTTGTATT GCCATAAGCA GCCGCCGGTC CTGGAGCTTG CCGATGGCCG CCGCATTACG
ACGCGCACTG TGGTTATCGC CAGCGGCGCG GAGTATCGGC GGCCTGTCGT CGCGGACCTG
CCACGCTTCG AGCGCTGTGG CGTCTATTAT TGGGCTACGC CGATCGAGGC GAGACTGTGC
CGCAAAGAGC CGGTGTTGCT GCTAGGCGGC GGCAATTCCG CGGGGCAGGC GGCAGTGTTT
CTCGCTTCAC ACGCCGAGCA TGTGCATATG TTCATTCGCG GCGCGAGCCT CGCGCGCAGC
ATGTCGCATT ATCTGGCCGA GCGTGTCGCA TCGCTGCCGA ATGTGACGCT TCATACGCAT
ATCGAACTAA CCGCGCTCGA AGGGGCGGCA CGCCTCGAGC GCGTGCACTA CCGCGGTGCC
GGCGGCATTG AAGGAAGCAT GACGGCACAT CATCTGTTCG TATTCATCGG TGCGGATCCG
AATACGGAAT GGCTCAGGAC ATGCAGTGTG TCGCTCGACA GCAAAGGTTT CGTCCTGACG
GGCGCTGAGT TTGGGGAAGC GGGCGTCCAT GCGATGCCGC TGCAGACGAG CGTCGAGGGT
ATCTTTGCGA TCGGCGACGT GCGTTCAGGA TCGACCAAGC GCGTCGCGTC GGCGGTGGGT
GAGGGCGCGG CCGTGGTGGG GCAGATTCAT GGTTTCCTGG CGGGCGTGCG GTGA
|
|---|
| Protein sequence | MSNESRPQGD TSAPLPPADE SHIDEGALAD DPAVRDHPRY QQMFPVLTDA EVDRIRRFGS
LSRYVKGELL YRAGSLCPGM FVLLSGKVRI VGRDGLGHER IIHTYTQRGE FTSDVTQLSS
KPAVVDAHVV EDVEAVLVRP DELSAMMISE ADLGEKIMRA LILRRVLVIE RGQGVILVGS
SNHPQLLALQ NFLRRNAFPN MTLDAQRDPE AIALLERLTP QPNDFPLVVC PNGTVLRNPD
EGQLASCLGL IPEFDPAHVY DVAIVGAGPA GLAAAVYAAS EGLSVAALDC RAPGGQAGTS
ARIENYLGFP TGITGQALAG RAFVQAQKFG AHIGIPCEVK ALYCHKQPPV LELADGRRIT
TRTVVIASGA EYRRPVVADL PRFERCGVYY WATPIEARLC RKEPVLLLGG GNSAGQAAVF
LASHAEHVHM FIRGASLARS MSHYLAERVA SLPNVTLHTH IELTALEGAA RLERVHYRGA
GGIEGSMTAH HLFVFIGADP NTEWLRTCSV SLDSKGFVLT GAEFGEAGVH AMPLQTSVEG
IFAIGDVRSG STKRVASAVG EGAAVVGQIH GFLAGVR
|
|---|
| |