| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4710 |
|---|
| Symbol | |
|---|
| ID | 6278878 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 805918 |
|---|
| End bp | 806655 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642615793 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_001888446 |
|---|
| Protein GI | 187919415 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3233] Predicted deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 0.770793 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGTTC CGAAATTCAT ACTGCGCTTC GATGACATCA CGCCGGAAAT GGCCTGGTCG
CGCTTCGACC CGTTCGACGA GCTTTCCATG GATCAGGACC TGCCGTTGCT CGTCGGCGTC
GTGCCGAACT GTCTCGATCA GACGCTTGTC GTCGAGCCGG CGAGAGACGC GTTCTGGGAC
ACGGTGCGTG GTTGGGTCGA TCGCGGCTGG AGCATCGCGC AGCACGGCTA CACCCACCAA
TACGTTACCG AGCATCCCGG GCTGTTGCGT CTTGGCAGTA AATCGGAGCT GGCCGGTCTC
TCCTATGAGG AGCAGTTCGC CAAGCTGCAG GCGGGAAAGG CGATTCTTCA GCAAGAAGGC
GTTTGGCAAC CGGTATTCAT GGCGCCTTCC CACTCGTTCG ACGAAGCGAC GCTCCGCGCG
CTGGCCGACC TCGACTTCAA GTATCTGACT GACGGCAGCG GCGTCTATCC GTACAAATTC
GGCGCGCTCA CCGCGGTGCC GCAGTTGTTC GCAACGCCGC TGCATTTTGG TTTCGGCGTG
TATTCCATTT GCCTGCATGT CAATACGCTC AGCGAGGCCG AGATTGACCG GATCGTTGGC
TTCGTGAAGA AGAACCGCTC GCGGTTCATC TCTTTCGAAG AAGCCGCGAG CGTCAGAACG
CCTGTCCCGG GCGTCGCGAT GGCGATGCGC TTTTTAACCT CTACCCCGTT GCGCGCGATG
CGCCGCTTGA GGGGCTGA
|
|---|
| Protein sequence | MVVPKFILRF DDITPEMAWS RFDPFDELSM DQDLPLLVGV VPNCLDQTLV VEPARDAFWD
TVRGWVDRGW SIAQHGYTHQ YVTEHPGLLR LGSKSELAGL SYEEQFAKLQ AGKAILQQEG
VWQPVFMAPS HSFDEATLRA LADLDFKYLT DGSGVYPYKF GALTAVPQLF ATPLHFGFGV
YSICLHVNTL SEAEIDRIVG FVKKNRSRFI SFEEAASVRT PVPGVAMAMR FLTSTPLRAM
RRLRG
|
|---|
| |