| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4680 |
|---|
| Symbol | |
|---|
| ID | 6280205 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 775730 |
|---|
| End bp | 777703 |
|---|
| Gene Length | 1974 bp |
|---|
| Protein Length | 657 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642615765 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001888418 |
|---|
| Protein GI | 187919387 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.293747 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTCTGT TAGTCAAATT GAGGGAGGCG CTGTCGGTCG CGGAACGCGA CCCCGAGCTG
GTACGTTCGC AGCTCGAAGC ATTCGGCCAC CAGGTCCCGC TTCTTTATTT CATCCTGCTC
GTCAATACGG CAGCCGTTGC GATCACACAC GTGAACTGCG CGCCGGCCTG GCTGTCGATC
TACTTTCCCG CGACGCTGTG CGCGCTGTGC ATCATCCGCT GCATACGCTG GTGGCGGCTT
CGGCACCGCG TCCTGACTCT CGACAAAGCC GTGCCCGAAG TGCGCAAGCT GACCTGGCTT
GCGGGCCTCT TCGCCGTCGC ATTCAGCGCC TGGTCCTTGT TCCTTTTCCC CTACGGCACC
GCGTATGAAC AGACGCAGGT GGCGTTTTAC ATGGCGACCA CGCTGGTCGG CTGCGTGTTC
TGCCTGATGC ACCTGCGCGC CGCGGCCATG CTGCTGCTGT CTATCGTCAT CCTAAGCTTT
TCGATATTTC TGGTGTTCAC AGGCTATCCG GTCTTCATTG CGATGGCTGT CGACATGACC
CTCGTCGGCA TTGCGCTCGC CTTTATCATT CAGCTGTATT GCCGGACCTT TGCCGATGTG
GTGCACGCAC AGCGCGAATT GCAGGCGAGC CAGCAGAAGA CGCAGCGCCT GAGCGACGAC
AACTTCCGGC TCGCGAGTAT CGACAGTCTG ACGGACCTGC CTAACCGGCG CAGTTTCTTC
GCCTCGTTGC GTGCGTTGTC CGAACAGGCG ATCGGCACAA GTGGCGGCTT CAATGTCGGA
CTGATCGATC TGGACGGTTT CAAGCAGGTC AACGATATCT ACGGCCACGC CAGCGGCGAC
CTCGTTCTTC AGGAAGTCGG CTCGCGGCTG TTGGCGCTTG CCGAGCCCGG CATTTTCTTC
GCACGCCTCG GCGGCGACGA ATTCGGCGTG CTGGCGCAGC ACAAGCTGAC GGACGAGACG
CTCGTCGAGT TGGGCGAGCG CATCTGTGAG GCACTCGGTC AGCCGTACCG GGTCGCCGGC
AATGTCGCCG AGTTGTCGGG CACGATCGGC TGGGCCGCGT TTCCCGAGGC CGGCACGACG
GTGGCGCAGG TGTTCGAACG CGCGGACGCC GCGCTGTACG TCGGCAAGGA AAGCCGGCGC
GGCACGCCCG TCATCTTCTC GACCGAACAT GAAACGCGCA TCCGGCGTTC GAGTCTCGTT
ACCCAGGAGC TGCGTCACGC GGACCTCGAG TCGGAACTGT TTCTGGAATT TCAGCCGATT
TACGACGTGG TCACGCAACG CACCCTCGGC ATGGAAGCGC TTGGGCGCTG GCATAACGCC
CGGCTCGGCG CCGTGAGGCC GGAAGAATTC ATTCGGATTG CCGAGCGAAC CGAACTGATT
CTGCGCATCA CGGACGTCCT GCTGCACAAG GCGCTCGACG AAGCCGCGCG CTGGCCGTGC
GAGCTCTATC TGTCGTTCAA TCTGTCGGCG ATCGATATCT GCACTTCCGC GCGCGCCGGC
CGGTTGATCG ATATCGTGTT GGCTAGCGGC GTGCCGCCGC ATCGCGTGTC GTTCGAAATC
ACCGAGACCG CCGTGACGCG CGATTTCGAA CAGGCCCGCA GCTCGCTCAC CATGATCAAG
AAAGCCGGCT GCCGCGTGTC GCTCGACGAC TTCGGCACCG GTTACTCGAG CCTCAGCTAC
GTGCACCGCC TGCCCTTCGA TACGATCAAG ATCGATCGCA GCTTCATGAC GGACGTGGAT
ACCAACAGCG CGTCGAAGAA AATCGTCAAG TCGGTACTCG ATCTGTGCCG CAACCTTGGA
CTCGAATGCG TGGTGGAAGG ACTCGAGACG GCATCGCAAG TCGAGGTCGT CAAGACGCTT
GGCGCACGCG CGGTACAGGG TTATCTGTTC AGCCGGCCGA TGCGGGCGAG CGCAATCGCC
GCGTATCTGC AAACGGCGCA GGGGCACGAC TACGCTGTGC AAATGCTGCC GTAG
|
|---|
| Protein sequence | MILLVKLREA LSVAERDPEL VRSQLEAFGH QVPLLYFILL VNTAAVAITH VNCAPAWLSI
YFPATLCALC IIRCIRWWRL RHRVLTLDKA VPEVRKLTWL AGLFAVAFSA WSLFLFPYGT
AYEQTQVAFY MATTLVGCVF CLMHLRAAAM LLLSIVILSF SIFLVFTGYP VFIAMAVDMT
LVGIALAFII QLYCRTFADV VHAQRELQAS QQKTQRLSDD NFRLASIDSL TDLPNRRSFF
ASLRALSEQA IGTSGGFNVG LIDLDGFKQV NDIYGHASGD LVLQEVGSRL LALAEPGIFF
ARLGGDEFGV LAQHKLTDET LVELGERICE ALGQPYRVAG NVAELSGTIG WAAFPEAGTT
VAQVFERADA ALYVGKESRR GTPVIFSTEH ETRIRRSSLV TQELRHADLE SELFLEFQPI
YDVVTQRTLG MEALGRWHNA RLGAVRPEEF IRIAERTELI LRITDVLLHK ALDEAARWPC
ELYLSFNLSA IDICTSARAG RLIDIVLASG VPPHRVSFEI TETAVTRDFE QARSSLTMIK
KAGCRVSLDD FGTGYSSLSY VHRLPFDTIK IDRSFMTDVD TNSASKKIVK SVLDLCRNLG
LECVVEGLET ASQVEVVKTL GARAVQGYLF SRPMRASAIA AYLQTAQGHD YAVQMLP
|
|---|
| |