| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4628 |
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| Symbol | |
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| ID | 6280164 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 713401 |
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| End bp | 715545 |
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| Gene Length | 2145 bp |
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| Protein Length | 714 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642615716 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001888369 |
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| Protein GI | 187919338 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.342126 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCACA CGCAGCTCGC ATCCCCGATC GACGATATCA ACCAGCGGGC CGTCTCGTCG
TTCTCGGCCG GCCAATTCGC CGAGGCTTTG TCGATGGTGA CGCCGCTCGT CGACGGCGAT
GCGATGCCGG ATGGCGCCCT CGCCGACGCG TTGAATATCG CCGGGGCCTG TTCGTTCGCC
TTGCAGCGTC CCGCCGAGGC GGAACGCTAT TGGCGCCGCT GTCTGCAACT CAGACCGGAC
TATGCCGACG TGTACGGCAG CCTCGGCATG CTGCTCAAGT CGCTCGGTCG TCTGTCGGCG
GCCAAGGCGA TGTACCGGCA ACTGGTCGCG CTGCGGCCCG GCGACCCGGA CGCCCGCAAT
CATCTCGGCG CCGTGCTCTA CGGGCTCGGC TACAAGGAGG AAGCGGAGGC GTCGTATCGC
CAGGCGCTGG CCATTCGCCC GGACTACGCC GAAGCCCATT ACAACCGCGG CATCGTGTTG
CATGAACTGC GCCGCCCGCA GGAAGCGGAA GCGGCGTTCC GGGATGCACT GCCGGGACTG
CCGGCTCATG CCGAAGTCCA TAACAATCTG GGCAACGTGC TGATGGAATT GGGCCGTCTC
GCCGAAGCGG ACGCCGCCTA TCGCGAGGCA CTGACAATTC GACCGCAGTA TCCGGAGGCG
CTCAACAACC TCGGCGGCGT GCTGAAGGCG ACGTTTCGTC ACACCGAAGC CGAGCTGGCT
TTTCGCCTCG CCCTCGCCAT TCGTCCGGAT TACGCGGAAG CCCTGCTGAA TCTCGGCACC
GTGCTCGCCG ATTTCGAACG TTTGCCCGAA GCGGAAGCGG CTTATCGCGA CGCCATCGCG
CAACGTCCCG ATTACGCCGA AGCGCACTAC AACCTCGGTG TGACGCTGTG CAAAATGGAG
CATCTGTTCG AGGCCGAAGC GGCTTACCGG GAAGCGATCC GCCTGCGGCC CGATCTCGTT
CACGCGCACA ACAACCTGGG GTGCGTGCTG CGCCGGCTGG ATCGTTTGCC GGCGGCGGTC
GACGCTTTCG AGCAGGCGCT TGGCGTGTGC CCCGATATGG CCGAGGCGCA CTACAACCTA
GGCGCGGCGA GGGCGCAACT CATGCAATTC CCCGAGGCCG AAAGCGCGTA TCGGCGAGCG
CTCGCTTTAC GTGCCGATTA CGGCGATGCG AAATTCGGCC TGAGCGTGTT GCTGCTCGGC
ATGGGCCGTT TTGAAGAGGG TTGGCGTCTT TACGAATGCC GCTACCAGCA ACCTGGTTTC
GTGCATCACA AGACTGTGGC GATGCTGGGT TGCCCGCAGT GGCAAGGCGA CACGCTCGCC
GACAAGTCGC TGCTGGTGTG GCAGGAGGAC GGTCTCGGCG ACATGATTCA GTTCAGCCGC
TATTTCGCCT TGCTGAAAGC GCAGGGCGCC TCGCATATCG CCTTCGCGTG CGCACCGTCG
CTGCACAGGC TGATGGCATG CGTCGACGGC GTCGATGCCG TGCTCGATCA CGACACCGCG
CGCGCACAAA CGTCCGCTTA CGACTGCTGG ACGAGCCTGC TGAGCGCGCC GCTGCATCTG
CGTACGAGTG TGGACACGAT TCCGCGTGCC GTGCGTCTCG CGGCGGAGCC GGCGCTGGTC
GAGCGGTGGC GTCCCGTGCT GGACGCACTG CCTTCCGGCC GCAGGATCGG TCTGGTATGG
AAAGGCAACG CGAACCATCA TAACGATGTG AACCGCTCGA TCCCTTCGCT CGCCATATTG
GCGCCGCTTT GGAGCGTGCC CGGCGTGAGC TTCGTGAGTC TGCAAAAAGG GCGCGGCGAG
GACGAGGCGC GCCAGCCGGC CGCCGATCAA CCGCTGCTCG ACCTAGGCTC GCGCGTGACG
GATTTCGCGG ACAGCGCCGC GATCATCGCG CAACTCGATC TGGTGATTTG CGTGGACACG
TCTACCGCGC ATTTGGCCGC GTCGCTCGGC AAGCCGTGCT GGGTGATGCT GCCGGAAAAA
GATATCGACT GGCGCTGGCT GCACGATCGC AACGATTCGC CGTGGTATCC GCACACGTTG
CGTCTGTTCC GACGCGCGCC GGGCGAGGAT TGGTCGATGC CGGTCGAACG GGTGCGCGAG
GCGTGCGTCG AACGATTCGG CGCGGCGGAC CATACGCCTA ACTGA
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| Protein sequence | MNHTQLASPI DDINQRAVSS FSAGQFAEAL SMVTPLVDGD AMPDGALADA LNIAGACSFA
LQRPAEAERY WRRCLQLRPD YADVYGSLGM LLKSLGRLSA AKAMYRQLVA LRPGDPDARN
HLGAVLYGLG YKEEAEASYR QALAIRPDYA EAHYNRGIVL HELRRPQEAE AAFRDALPGL
PAHAEVHNNL GNVLMELGRL AEADAAYREA LTIRPQYPEA LNNLGGVLKA TFRHTEAELA
FRLALAIRPD YAEALLNLGT VLADFERLPE AEAAYRDAIA QRPDYAEAHY NLGVTLCKME
HLFEAEAAYR EAIRLRPDLV HAHNNLGCVL RRLDRLPAAV DAFEQALGVC PDMAEAHYNL
GAARAQLMQF PEAESAYRRA LALRADYGDA KFGLSVLLLG MGRFEEGWRL YECRYQQPGF
VHHKTVAMLG CPQWQGDTLA DKSLLVWQED GLGDMIQFSR YFALLKAQGA SHIAFACAPS
LHRLMACVDG VDAVLDHDTA RAQTSAYDCW TSLLSAPLHL RTSVDTIPRA VRLAAEPALV
ERWRPVLDAL PSGRRIGLVW KGNANHHNDV NRSIPSLAIL APLWSVPGVS FVSLQKGRGE
DEARQPAADQ PLLDLGSRVT DFADSAAIIA QLDLVICVDT STAHLAASLG KPCWVMLPEK
DIDWRWLHDR NDSPWYPHTL RLFRRAPGED WSMPVERVRE ACVERFGAAD HTPN
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