| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4619 |
|---|
| Symbol | |
|---|
| ID | 6278904 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 703406 |
|---|
| End bp | 704362 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642615707 |
|---|
| Product | type II secretion system protein |
|---|
| Protein accession | YP_001888360 |
|---|
| Protein GI | 187919329 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2064] Flp pilus assembly protein TadC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.340215 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTG AACAGATCGT GCTGCTGGGG GTGATGTTTC TGATCGTGTT CGGCGCGGCG
CTGAAGGCGA TGGCATTGCT GCGCCCCGAC CCGGTGCAAC GGCGCATTGA AGAGATCGGG
CAGCCGGGTG TCGCCGCCGA GGCTGACACC GGTGCACAAA AGAACTGGGT CGAGACCGTC
ACGAAGATGT CCGAGCGGGT CGCCAGACTT TCGCTGCCGA AAGAGGACTG GGACAAGTCG
GTGCTGCGTC TGCGCTTCGC GAACGCGGGT ATTCGCACGC CGTCCGCGGC AGCCGTCTAT
TTCGCTGTCA AGACTGTGCT GGCGCTTGCG CTGCCGGCAA TTGCGCTGAT CGTTTTCGGG
AACGCCTTCC AGGCCGGCGA GCGCATCTAT TTGCTGCTGA CCGTGCTGGC TGCCTCGGCG
CTCGGCTTCT ATCTGCCGAA CGTGGTCATG AGGCGCCTCG TTGAAAGCCG TCAGCGCAAG
CTGTTCGAGG ATCTGCCCGA CGCGCTCGAT CTGATGACCG TTTGCGTGGA AGCGGGCCTC
GGCCTCGACG CAGCGATGCT GCGCGTCACC CAGGAAATCG GCGTGAAGAG CCACGCGCTC
AAGGACGAAT TCGACATGGT GCTGCTGGAG CTGCGCGCCG GCTCGGGGCG CGAGAAGGCC
CTGCGCAACC TGTCGCTGCG CACCGGCGTG GAAGATATCG ACACGCTCGC CGCGATGCTG
ATCCAGGCGG ACCGCTTCGG CACCAGCGTG GGCGACTCGC TCCGTGTTTA TACCGACAAC
CTGCGCACCA AACGACGCTT GCGTGCGGAA GAGCAGGCTG CGAAGATCGC TTTGAAGCTG
CTGTTTCCGC TGATGTTTTT CATTTTTCCG ACACTGCTGG CCGTGCTGGT CGGTCCGTCG
GCGATCCAGA TCGTGCGTCA GCTGTCACCG GCCGTCCAAG GTATGGCGGG CGGTTGA
|
|---|
| Protein sequence | MKIEQIVLLG VMFLIVFGAA LKAMALLRPD PVQRRIEEIG QPGVAAEADT GAQKNWVETV
TKMSERVARL SLPKEDWDKS VLRLRFANAG IRTPSAAAVY FAVKTVLALA LPAIALIVFG
NAFQAGERIY LLLTVLAASA LGFYLPNVVM RRLVESRQRK LFEDLPDALD LMTVCVEAGL
GLDAAMLRVT QEIGVKSHAL KDEFDMVLLE LRAGSGREKA LRNLSLRTGV EDIDTLAAML
IQADRFGTSV GDSLRVYTDN LRTKRRLRAE EQAAKIALKL LFPLMFFIFP TLLAVLVGPS
AIQIVRQLSP AVQGMAGG
|
|---|
| |