Gene Bphyt_4617 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_4617 
Symbol 
ID6278943 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp700975 
End bp702357 
Gene Length1383 bp 
Protein Length460 aa 
Translation table11 
GC content63% 
IMG OID642615705 
Producttype II secretion system protein E 
Protein accessionYP_001888358 
Protein GI187919327 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4962] Flp pilus assembly protein, ATPase CpaF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value0.511137 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCATTGC GCGAACAGTT GATGATCCAG AGCGGGGCGA TGCCGTTCGA CGGCGCCAGT 
CCCGCAACTG CCGCGGCGGG CGCAGCCACT GAAAGCCTCG CGGCGCGGCG CGCCTATCAG
CAGCTCAAGA TGAACATTCA TCAGGCGATC ATCGACCGGG TGGAGCTCGA CAAGCTGCAG
CGGCTGTCGC CCGAGCAGAT CAGGCGCGAG CTGGCGCAAC TGGTGGAACG GATCGTCGAC
GAAGACAAGA TTCCGATGAA CGAACTCGAG CGCCGTCGTC TCGCTCAGGA CGTGCACGAC
GAAATGGTCG GCCTCGGCCC GCTCGAACCG CTGCTCAACG ACCCGACCAT CTCCGACATT
CTGGTGAACA CGTCCCAGCA CGTATATGTG GAGCGGCGCG GGCGCCTCGA ACACACCGAC
GTGACTTTCT ACGACGACGC GCATCTGATG AAGATCATCG AGCGCATCGT CTCGCGCGTG
GGCCGCCGGA TCGACGAATC CACGCCGATG GTCGACGCTC GCCTGCCGGA CGGCTCGCGC
GTCAACGCGA TTATTCCGCC GTCGGCGATC GACGGACCGC TGGTGTCGAT TCGCCGCTTC
GCGGTGAATC CGCTCACAGT CACCGACATG GTGAACAACC AGAGCTTCAC GCCCGCGATG
GCGCAACTGC TCGAAGCGCT GATCAAGTCG AAGCTGAACG TACTGATTTC GGGCGGCACG
GGCAGCGGCA AGACCACGCT GCTCAATCTG CTTTCCGGCT TCATTCCCGA GGACGAGCGG
GTCGTGACGA TCGAAGACGC AGCCGAGTTG CAGATGCGCC AGCAACACGT GCTGCGGCTC
GAAACGCGGC CGCCGAATAT CGAAGGCAAG GGCGAAATCT CGCAGCGCTC GCTGGTGAAG
AACGCGCTGC GGATGCGCCC CGACCGTATC GTGCTGGGCG AAGTGCGCGG CGCCGAAGCG
CTCGACATGC TGCATGCCAT GAACACCGGC CACGAGGGGT CGATGGCGAC GCTGCACGCG
AACACGCCGC GCGACGCGCT CACGCGGCTC GAGAACATGG TCGGCATGGC CGGTCTGACG
ATGCCGATCA AGGCGATCCG CCAGCAGATC GCGTCGGCCA TCACGGTCGT GGTGCAGGCT
TCGCGACTCA CCGACGGACG CCGCAAGCTG ATGAGCATCT CCGAAATCAC CGGCATGGAA
GGCGACATCA TCAACATGCA GGAGATCTTC ACGTTCAAGC GTACCGGTGT CGACGAAAAC
GGCATGATCA AAGGCTATTT CTGTGCGAGC GGGGTACGGC CGAAATTCTG CGAACGGCTG
GCGGGCTTCG GCATCGTGCT GCCGGACCAG ATGTTCGATC CGGCACGGCG TTTCGAAGTA
TGA
 
Protein sequence
MSLREQLMIQ SGAMPFDGAS PATAAAGAAT ESLAARRAYQ QLKMNIHQAI IDRVELDKLQ 
RLSPEQIRRE LAQLVERIVD EDKIPMNELE RRRLAQDVHD EMVGLGPLEP LLNDPTISDI
LVNTSQHVYV ERRGRLEHTD VTFYDDAHLM KIIERIVSRV GRRIDESTPM VDARLPDGSR
VNAIIPPSAI DGPLVSIRRF AVNPLTVTDM VNNQSFTPAM AQLLEALIKS KLNVLISGGT
GSGKTTLLNL LSGFIPEDER VVTIEDAAEL QMRQQHVLRL ETRPPNIEGK GEISQRSLVK
NALRMRPDRI VLGEVRGAEA LDMLHAMNTG HEGSMATLHA NTPRDALTRL ENMVGMAGLT
MPIKAIRQQI ASAITVVVQA SRLTDGRRKL MSISEITGME GDIINMQEIF TFKRTGVDEN
GMIKGYFCAS GVRPKFCERL AGFGIVLPDQ MFDPARRFEV