Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_4617 |
Symbol | |
ID | 6278943 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | + |
Start bp | 700975 |
End bp | 702357 |
Gene Length | 1383 bp |
Protein Length | 460 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642615705 |
Product | type II secretion system protein E |
Protein accession | YP_001888358 |
Protein GI | 187919327 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 0.511137 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCATTGC GCGAACAGTT GATGATCCAG AGCGGGGCGA TGCCGTTCGA CGGCGCCAGT CCCGCAACTG CCGCGGCGGG CGCAGCCACT GAAAGCCTCG CGGCGCGGCG CGCCTATCAG CAGCTCAAGA TGAACATTCA TCAGGCGATC ATCGACCGGG TGGAGCTCGA CAAGCTGCAG CGGCTGTCGC CCGAGCAGAT CAGGCGCGAG CTGGCGCAAC TGGTGGAACG GATCGTCGAC GAAGACAAGA TTCCGATGAA CGAACTCGAG CGCCGTCGTC TCGCTCAGGA CGTGCACGAC GAAATGGTCG GCCTCGGCCC GCTCGAACCG CTGCTCAACG ACCCGACCAT CTCCGACATT CTGGTGAACA CGTCCCAGCA CGTATATGTG GAGCGGCGCG GGCGCCTCGA ACACACCGAC GTGACTTTCT ACGACGACGC GCATCTGATG AAGATCATCG AGCGCATCGT CTCGCGCGTG GGCCGCCGGA TCGACGAATC CACGCCGATG GTCGACGCTC GCCTGCCGGA CGGCTCGCGC GTCAACGCGA TTATTCCGCC GTCGGCGATC GACGGACCGC TGGTGTCGAT TCGCCGCTTC GCGGTGAATC CGCTCACAGT CACCGACATG GTGAACAACC AGAGCTTCAC GCCCGCGATG GCGCAACTGC TCGAAGCGCT GATCAAGTCG AAGCTGAACG TACTGATTTC GGGCGGCACG GGCAGCGGCA AGACCACGCT GCTCAATCTG CTTTCCGGCT TCATTCCCGA GGACGAGCGG GTCGTGACGA TCGAAGACGC AGCCGAGTTG CAGATGCGCC AGCAACACGT GCTGCGGCTC GAAACGCGGC CGCCGAATAT CGAAGGCAAG GGCGAAATCT CGCAGCGCTC GCTGGTGAAG AACGCGCTGC GGATGCGCCC CGACCGTATC GTGCTGGGCG AAGTGCGCGG CGCCGAAGCG CTCGACATGC TGCATGCCAT GAACACCGGC CACGAGGGGT CGATGGCGAC GCTGCACGCG AACACGCCGC GCGACGCGCT CACGCGGCTC GAGAACATGG TCGGCATGGC CGGTCTGACG ATGCCGATCA AGGCGATCCG CCAGCAGATC GCGTCGGCCA TCACGGTCGT GGTGCAGGCT TCGCGACTCA CCGACGGACG CCGCAAGCTG ATGAGCATCT CCGAAATCAC CGGCATGGAA GGCGACATCA TCAACATGCA GGAGATCTTC ACGTTCAAGC GTACCGGTGT CGACGAAAAC GGCATGATCA AAGGCTATTT CTGTGCGAGC GGGGTACGGC CGAAATTCTG CGAACGGCTG GCGGGCTTCG GCATCGTGCT GCCGGACCAG ATGTTCGATC CGGCACGGCG TTTCGAAGTA TGA
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Protein sequence | MSLREQLMIQ SGAMPFDGAS PATAAAGAAT ESLAARRAYQ QLKMNIHQAI IDRVELDKLQ RLSPEQIRRE LAQLVERIVD EDKIPMNELE RRRLAQDVHD EMVGLGPLEP LLNDPTISDI LVNTSQHVYV ERRGRLEHTD VTFYDDAHLM KIIERIVSRV GRRIDESTPM VDARLPDGSR VNAIIPPSAI DGPLVSIRRF AVNPLTVTDM VNNQSFTPAM AQLLEALIKS KLNVLISGGT GSGKTTLLNL LSGFIPEDER VVTIEDAAEL QMRQQHVLRL ETRPPNIEGK GEISQRSLVK NALRMRPDRI VLGEVRGAEA LDMLHAMNTG HEGSMATLHA NTPRDALTRL ENMVGMAGLT MPIKAIRQQI ASAITVVVQA SRLTDGRRKL MSISEITGME GDIINMQEIF TFKRTGVDEN GMIKGYFCAS GVRPKFCERL AGFGIVLPDQ MFDPARRFEV
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