| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4406 |
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| Symbol | |
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| ID | 6280358 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 465882 |
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| End bp | 469355 |
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| Gene Length | 3474 bp |
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| Protein Length | 1157 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642615499 |
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| Product | transglutaminase domain protein |
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| Protein accession | YP_001888152 |
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| Protein GI | 187919121 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG1305] Transglutaminase-like enzymes, putative cysteine proteases
[COG4196] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.298511 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCCATAC GCGTCGCGTT GCATCATGTC ACACATTACC GTTACGACAG GCTGGTTTCA
CTGTCGCCCC AGGTCGTGCG TCTCAGGCCT GCGCCGCATT GCCGGACCCC GATCCTCTCG
TATTCGATGC GGGTCGAGCC GGCCGAACAC TTCATCAACT GGCAGCAGGA CGCTTTCGCC
AACTATCAGG CGCGGCTCGT GTTTCCCGAG AAGACGCGCG AATTCAAGGT GACCGTCGAT
CTGGTCGCCG AAATGGCCGT CTACAACCCG TTCGACTTCT TTCTCGAACC CTCGGCCGAG
CAGTTTCCCT TCGAGTATTC GCCCGGCCTC GCGCTGGAAC TCGCGCCCTA CCGCGTCAAG
CGGCCGATGA CGCCGCGCTT CGCCGAGTTC GTCGCGAGTA TCGACCGCAC GCCGGCCGCC
ACCGCCGACT TTCTCGTCGG CCTGAATCAG CGGTTGCAGC GCGAGATCCG CTACCTGATC
CGGATGGAAC CGGGCGTGCA GACGCCCGAG GAAACGCTCG TGAGCGCCGC GGGTTCGTGC
CGCGACTCCG GCTGGCTGCT GGTCGAGACC TTGCGGCAGT TAGGGCTGGC GGCGCGCTTC
GTGTCCGGCT ATCTGCTGCA GCTCGCGCCC GACGTCAAAT CGATCGACGG CCCGAGCGGC
ACCGAAGTCG ACTTCACCGA CCTGCACGCG TGGTGCGAGG TCTACCTGCC GGGCGCGGGC
TGGATCGGTC TCGATCCGAC CTCCGGGCTG CTGGCGGGCG AAGGGCATAT CCCCGTCGCC
TGCACGCCCG AACCGGGCAG CGCGGCGCCG ATCTCCGGCG CCGTCGACGA GTCCGAGGTC
GAATTCGAAC ACACGATGTC GATCGAGCGG GTTCTGGAGA CGCCGCGCGT CACCAAGCCG
TTCAGCGAAG CGGTGTGGGC CGACGTGCTG AAGATGGGCG CGCAGGTCGA CCGGCAATTG
CAGGACATGG ACGTGCGTCT GACGATGGGC GGCGAGCCGA CTTTCGTCTC GGTGCGCGAT
CGCGACGCCG CCGAATGGAA CACCGACGCG CTCGGCCCGA CCAAGCGCGG CTACGCGGTT
GCGCTGATGG ACAAGCTGCG CTCGCGCTAT GGCGCGAACG GTTTCCTGCA TATCGGCCAG
GGCAAGTGGT ATCCGGGCGA ACAACTGCCG CGCTGGGCGA TGTCGCTCTA CTGGCGCGCC
GACGGCGAGC CCTGCTGGCA CGATCCGTCT CTGTTCGCCG ACGAACGCGA GCCCGGCACC
TACACCGCGG CCGACGCGCA ACGCTTCCTC GCGCATCTCG CGAACAAGCT CTCGCTGGAC
ACGGACTGCA TCCAGCCCGG TTTCGAGGAC GTCTGGTACT ACCTGTGGCG CGAGCGGCGT
CTGCCGGTCA ACGTCGATCC CTTCGACGCG CGGCTGGACG ACGAATTGGA GCGCGTGCGC
CTGCGCCGCG TATTCGACGC GGGTCTGGGC GGCGCGACCG GCTACGTACT GCCGCTCGCG
CGCGAACGCG ACGTGCCCGG CGAGGCGCCG CAATGGGTCA GCGGCCGCTG GTTCTTCCGC
GACGAGCGCA TGTTCCTGAT TCCCGGCGAT TCGCCGATGG GTTACCGCTT GCCGCTCGAT
TCGCTGCCGT GGGTCTCGAA GACCGACTAT CCGTACCAGC ACGCGCACGA TCCGTTCGCG
CCGCCCGTGC CGTTGCGTCC GGCCGCGCAG TTGCGCATGC AATACGACGG CGAGCAGCGC
AGCATGAGCC CCGCCGATGC GCGGCGCGCG GCGGCGTTGT CGTCCTCGGC GGCGGATTTG
CTGAGCGGCA TGCCCGGCAG CGGCGTGCTG GCGTATGCGC GCCAACCGGG TGACGAGGCG
CCGCCCGAAC GCGGGCAATC GTCGAAGGAA ACGATCCGCA CCGCGATTTG CGTCGAAGCG
CGCGACCCGA AACGCGCGGC CGGTCCGAAG GCCGAAACGG AAGCATTCGG CAGCGGCCGC
ACGCTGCTGC ATGTCTTCAT GCCGCCGCTC ACCGAACTGG ACGACTATCT CGATCTGCTC
GCGGCCGTCG AGGCGACCGC AGCCGAGTTG CGCATGCAAG TGGTGCTCGA AGGCTATCCG
CCGCCGCGCG ATGCGCGCCT AAAAATACTG CAGGTCACGC CGGATCCGGG TGTGATCGAG
GTGAACATTC ATCCCGCGGC GAACTGGGAT CAACTGGTCG ATCACACCGA GTATCTGTAT
CAGTCGGCGG CTCAAAGCTA TCTGAGCAGC GAGAAGTTCA TGACCGACGG CCGGCACACC
GGCACCGGCG GCGGCAATCA CTTCGTGCTC GGTGGCGCAA CGCCCGCCGA TAGTCCGTTC
CTGCGCCGTC CGGATCTGCT CGCGAGCCTG ATCGCGTACT GGCACAACCA TCCGTCGCTG
TCGTATCTGT TTTCCGGGCT GTTCATCGGG CCGACCAGCC AGGCGCCGCG TATCGACGAA
GCGCGCAACG ATCAGGTCTA CGAACTCGAA GTGGCGTTCC GCGAGTTGCA GCGGCAGATC
GACATGCTCG GCGGTCGCGA CAGCGCGAGC CTGCCGGCAT GGATGATCGA CCGCTCGCTG
CGCAACATCC TGATCGACGT GACGGGTAAC ACGCACCGCG CCGAGTTCTG CATCGACAAA
CTCTATTCGC CCGATGGCCC GACCGGCCGC CTCGGCCTGC TCGAGTTGCG CGGCTTCGAA
ATGCCGCCGC ACGCGCGTAT GAGTCTCGTG CAGCAACTGT TGCTGCGCGC ACTGGTGGCG
CGCTTCTGGC ACACGCCGTA CACGCAGCGG CTCACGCGCT GGGGCACCGA ACTGCACGAC
CGCTTCCTGC TCGGCACCTT CGTGAAGATG GATTTCGACG ACGTGCTCGG CGAACTGAAC
CGCGCTGGCT TCGCCTTCGA CAGCAGCTGG TTCGCGCCGC ACTTCGAGTT CCGCTTTCCT
CTGGTCGGCG AAACCACGGT GAACGGCGTC TCGCTGACCA TCCGCAACGC GCTCGAACCG
TGGCACGTGA TGGGCGAGGA GGGCTCGCCG GGCGGCACGG TGCGTTACGT GGATTCGTCG
GTGGAGCGGC TCGAAGTGCG CGCGCTGGGC CTGAACGACA ATCGTCATGT GCTGACCGTC
AACGGCGTGC CCGTGCCGTT GCAGCCGACC GGCCGCGTCA GCGAATATGT GGCCGGCGTG
CGCTTTCGCG CGTGGTCGCA ACCGTCGGCG CTGCATCCGA CCATCGGCGT GGACGCGCCG
CTCACTTTCG ATCTGGTCGA CACATGGGCC GGCCGCTCGG TGGGCGGATG CCAGTATCAT
GTCGCTCATC CGGGCGGGCG CAATTACCAG ACCTTCCCGG TGAACGCCTA TGAGGCGGAA
AGCCGGCGGC GCGCGCGCTT CTTCGCGTCG GGACATACGC CGGGGCCGCT CACGGTCGAT
GCACCGCACC GCAGTCTGGA GTTTCCGTTC ACACTGGACC TGCGCTACTG GTGA
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| Protein sequence | MSIRVALHHV THYRYDRLVS LSPQVVRLRP APHCRTPILS YSMRVEPAEH FINWQQDAFA
NYQARLVFPE KTREFKVTVD LVAEMAVYNP FDFFLEPSAE QFPFEYSPGL ALELAPYRVK
RPMTPRFAEF VASIDRTPAA TADFLVGLNQ RLQREIRYLI RMEPGVQTPE ETLVSAAGSC
RDSGWLLVET LRQLGLAARF VSGYLLQLAP DVKSIDGPSG TEVDFTDLHA WCEVYLPGAG
WIGLDPTSGL LAGEGHIPVA CTPEPGSAAP ISGAVDESEV EFEHTMSIER VLETPRVTKP
FSEAVWADVL KMGAQVDRQL QDMDVRLTMG GEPTFVSVRD RDAAEWNTDA LGPTKRGYAV
ALMDKLRSRY GANGFLHIGQ GKWYPGEQLP RWAMSLYWRA DGEPCWHDPS LFADEREPGT
YTAADAQRFL AHLANKLSLD TDCIQPGFED VWYYLWRERR LPVNVDPFDA RLDDELERVR
LRRVFDAGLG GATGYVLPLA RERDVPGEAP QWVSGRWFFR DERMFLIPGD SPMGYRLPLD
SLPWVSKTDY PYQHAHDPFA PPVPLRPAAQ LRMQYDGEQR SMSPADARRA AALSSSAADL
LSGMPGSGVL AYARQPGDEA PPERGQSSKE TIRTAICVEA RDPKRAAGPK AETEAFGSGR
TLLHVFMPPL TELDDYLDLL AAVEATAAEL RMQVVLEGYP PPRDARLKIL QVTPDPGVIE
VNIHPAANWD QLVDHTEYLY QSAAQSYLSS EKFMTDGRHT GTGGGNHFVL GGATPADSPF
LRRPDLLASL IAYWHNHPSL SYLFSGLFIG PTSQAPRIDE ARNDQVYELE VAFRELQRQI
DMLGGRDSAS LPAWMIDRSL RNILIDVTGN THRAEFCIDK LYSPDGPTGR LGLLELRGFE
MPPHARMSLV QQLLLRALVA RFWHTPYTQR LTRWGTELHD RFLLGTFVKM DFDDVLGELN
RAGFAFDSSW FAPHFEFRFP LVGETTVNGV SLTIRNALEP WHVMGEEGSP GGTVRYVDSS
VERLEVRALG LNDNRHVLTV NGVPVPLQPT GRVSEYVAGV RFRAWSQPSA LHPTIGVDAP
LTFDLVDTWA GRSVGGCQYH VAHPGGRNYQ TFPVNAYEAE SRRRARFFAS GHTPGPLTVD
APHRSLEFPF TLDLRYW
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