Gene Bphyt_4397 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_4397 
Symbol 
ID6279378 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp455365 
End bp455988 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content64% 
IMG OID642615490 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_001888143 
Protein GI187919112 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCACATG ATGCTTCGAC CGACGCGACC ATCGGCGCGT CCGCACTGGA TCAGAAGAGC 
GCGTATCTCG CGGCGCTGCT CGAGCGCGTT TCAAGGCGCG AAGCCGGCGC GTTCGAGGCG
CTGTACCGGG CGTCGGCGCC GTCGCTATTC GGTCTCGCGG TGCGCGTCAC CCGCACCAGC
GAATCGGCCG AAGAAGTGGT GCAGGACGGC TTCATCAAGA TCTGGCGCTT CGCCGGGTCG
TACGACCCCG GCAAGGCTTC GCCGTCCACG TGGATGTCGA CCATCGTGAA GAATCAGGCG
CTCGATTATT TGCGGCGCAA TCCGTATTCC GGCGTGTATG TCGACGAACT GGACGAGCGC
AATGCCGCGG GCGACGCCGA CGTGAATTTC TGGCAGGAGT TCGCGCTGGA TGCCGAGCGT
CTGTCCTCCT ATCTCGGCCG CCTGGCTCCG GTTCAGCGTC AGGCGATCGC GCTTGCCTAT
TTCCGGGGTC AATCGCAATC GGAGATCGCG CATACTCTCG ATGCACCGGT CGGCACAGTG
AAAAGCTGGA TCAGCCGCGG ACTGGAGTCG CTGCGCGCGA TGGCCGATGC GCGACCTGCG
CCGCATCACG GCGGCCTTTA CTGA
 
Protein sequence
MSHDASTDAT IGASALDQKS AYLAALLERV SRREAGAFEA LYRASAPSLF GLAVRVTRTS 
ESAEEVVQDG FIKIWRFAGS YDPGKASPST WMSTIVKNQA LDYLRRNPYS GVYVDELDER
NAAGDADVNF WQEFALDAER LSSYLGRLAP VQRQAIALAY FRGQSQSEIA HTLDAPVGTV
KSWISRGLES LRAMADARPA PHHGGLY