| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4397 |
|---|
| Symbol | |
|---|
| ID | 6279378 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 455365 |
|---|
| End bp | 455988 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642615490 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_001888143 |
|---|
| Protein GI | 187919112 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACATG ATGCTTCGAC CGACGCGACC ATCGGCGCGT CCGCACTGGA TCAGAAGAGC
GCGTATCTCG CGGCGCTGCT CGAGCGCGTT TCAAGGCGCG AAGCCGGCGC GTTCGAGGCG
CTGTACCGGG CGTCGGCGCC GTCGCTATTC GGTCTCGCGG TGCGCGTCAC CCGCACCAGC
GAATCGGCCG AAGAAGTGGT GCAGGACGGC TTCATCAAGA TCTGGCGCTT CGCCGGGTCG
TACGACCCCG GCAAGGCTTC GCCGTCCACG TGGATGTCGA CCATCGTGAA GAATCAGGCG
CTCGATTATT TGCGGCGCAA TCCGTATTCC GGCGTGTATG TCGACGAACT GGACGAGCGC
AATGCCGCGG GCGACGCCGA CGTGAATTTC TGGCAGGAGT TCGCGCTGGA TGCCGAGCGT
CTGTCCTCCT ATCTCGGCCG CCTGGCTCCG GTTCAGCGTC AGGCGATCGC GCTTGCCTAT
TTCCGGGGTC AATCGCAATC GGAGATCGCG CATACTCTCG ATGCACCGGT CGGCACAGTG
AAAAGCTGGA TCAGCCGCGG ACTGGAGTCG CTGCGCGCGA TGGCCGATGC GCGACCTGCG
CCGCATCACG GCGGCCTTTA CTGA
|
|---|
| Protein sequence | MSHDASTDAT IGASALDQKS AYLAALLERV SRREAGAFEA LYRASAPSLF GLAVRVTRTS
ESAEEVVQDG FIKIWRFAGS YDPGKASPST WMSTIVKNQA LDYLRRNPYS GVYVDELDER
NAAGDADVNF WQEFALDAER LSSYLGRLAP VQRQAIALAY FRGQSQSEIA HTLDAPVGTV
KSWISRGLES LRAMADARPA PHHGGLY
|
|---|
| |